Variant report

Variant	rs1422930
Chromosome Location	chr5:167397593-167397594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11958655	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13171977	0.85[ASN][1000 genomes]
rs1422931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1422932	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs17069484	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4976565	0.94[ASN][1000 genomes]
rs62384411	0.83[EUR][1000 genomes]
rs71603845	0.87[ASN][1000 genomes]
rs9313394	0.81[ASN][1000 genomes]
rs994889	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167387800-167400600	Weak transcription	Right Atrium	heart
3	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:167395200-167399800	Weak transcription	Fetal Lung	lung
6	chr5:167395200-167406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:167395800-167400800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167396200-167407000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:167396400-167397800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:167396400-167401600	Weak transcription	NHEK	skin
11	chr5:167396800-167398800	Weak transcription	HSMMtube	muscle
12	chr5:167396800-167400000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:167397000-167400400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:167397000-167407800	Weak transcription	Left Ventricle	heart
15	chr5:167397200-167400400	Weak transcription	Right Ventricle	heart
16	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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