Variant report

Variant	rs11959381
Chromosome Location	chr5:75688260-75688261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11954110	1.00[JPT][hapmap]
rs11954779	1.00[JPT][hapmap]
rs4389666	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs890709	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11959381	S100Z	cis	lymphoblastoid	seeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75677400-75689000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:75677800-75691200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:75683200-75688400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:75685000-75691200	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:75685000-75691200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:75685000-75691200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:75685000-75691400	Enhancers	Primary T cells from cord blood	blood
8	chr5:75685000-75691400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:75685200-75688400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:75685200-75688400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:75685200-75688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:75685200-75688600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:75685200-75689000	Weak transcription	K562	blood
14	chr5:75685200-75697400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:75685200-75697600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:75685400-75691200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr5:75685400-75691200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr5:75685600-75691000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:75685800-75688600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:75686000-75689400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:75686200-75688400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:75686800-75690200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:75687000-75688600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:75687000-75688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:75687000-75688600	Weak transcription	HepG2	liver
26	chr5:75687000-75691000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:75687000-75691000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr5:75687000-75691200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr5:75687000-75691200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:75687200-75688400	Weak transcription	Fetal Thymus	thymus
31	chr5:75687200-75689000	Weak transcription	Primary B cells from cord blood	blood
32	chr5:75687200-75691000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr5:75687200-75691000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr5:75687200-75691200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr5:75687400-75689200	Weak transcription	Thymus	Thymus
36	chr5:75688200-75689200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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