Variant report

Variant	rs4389666
Chromosome Location	chr5:75685404-75685405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:75673917..75676615-chr5:75683010..75685997,3	K562	blood:
2	chr5:75679957..75682870-chr5:75683054..75686603,3	K562	blood:
3	chr5:75685103..75687444-chr5:75693897..75695814,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11959381	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs890709	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75675400-75685800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:75677400-75689000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:75677800-75691200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:75678800-75686600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:75680400-75685800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:75680800-75686000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:75681000-75685600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:75681000-75686800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:75681200-75685600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:75681200-75685600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:75681200-75685800	Weak transcription	Thymus	Thymus
12	chr5:75681400-75685600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:75681400-75685800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:75682000-75686000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:75683000-75685800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:75683200-75688400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:75683800-75687200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr5:75684200-75686800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:75684600-75686000	Enhancers	Placenta	Placenta
20	chr5:75684600-75687000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:75684800-75685800	Flanking Active TSS	HepG2	liver
22	chr5:75684800-75686200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:75685000-75686600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr5:75685000-75691200	Enhancers	Primary hematopoietic stem cells	blood
25	chr5:75685000-75691200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr5:75685000-75691200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:75685000-75691400	Enhancers	Primary T cells from cord blood	blood
28	chr5:75685000-75691400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr5:75685200-75685600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:75685200-75685600	Weak transcription	Fetal Thymus	thymus
31	chr5:75685200-75686200	Flanking Active TSS	Liver	Liver
32	chr5:75685200-75686600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr5:75685200-75686600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr5:75685200-75688200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:75685200-75688400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:75685200-75688400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:75685200-75688400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:75685200-75688600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:75685200-75689000	Weak transcription	K562	blood
40	chr5:75685200-75697400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr5:75685200-75697600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:75685400-75687000	Weak transcription	Pancreas	Pancrea
43	chr5:75685400-75691200	Enhancers	Primary T cells fromperipheralblood	blood
44	chr5:75685400-75691200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links