Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr5:112771751-112772349	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112771582..112773208-chr5:112822674..112824229,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-YTHDC2-1	chr5:112771263-112772871	ENSG00000232633.3

Variant related genes	Relation type
TSSK1B	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11948187	1.00[EUR][1000 genomes]
rs11948413	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11948437	1.00[EUR][1000 genomes]
rs11948446	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11948538	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11948830	1.00[EUR][1000 genomes]
rs11949387	1.00[EUR][1000 genomes]
rs11949669	1.00[EUR][1000 genomes]
rs11950791	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11953559	1.00[EUR][1000 genomes]
rs11953906	0.90[AFR][1000 genomes]
rs11954798	1.00[EUR][1000 genomes]
rs11955591	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11956234	1.00[EUR][1000 genomes]
rs11956800	1.00[EUR][1000 genomes]
rs11959955	1.00[EUR][1000 genomes]
rs34161832	1.00[EUR][1000 genomes]
rs58548907	1.00[EUR][1000 genomes]
rs59149164	1.00[EUR][1000 genomes]
rs59757131	1.00[EUR][1000 genomes]
rs61341835	1.00[EUR][1000 genomes]
rs7729214	1.00[EUR][1000 genomes]
rs7731164	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112762000-112786000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112764400-112779200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112764600-112786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112764800-112786800	Weak transcription	NHEK	skin
5	chr5:112770200-112773800	Enhancers	Fetal Stomach	stomach
6	chr5:112770400-112772200	Enhancers	Fetal Muscle Leg	muscle
7	chr5:112770400-112783400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:112770600-112773600	Enhancers	Fetal Heart	heart
9	chr5:112770600-112786800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:112770800-112773000	Enhancers	Fetal Brain Male	brain
11	chr5:112770800-112773600	Enhancers	Fetal Lung	lung
12	chr5:112771400-112772200	Enhancers	Fetal Brain Female	brain
13	chr5:112772000-112775200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: