Variant report

Variant	rs58548907
Chromosome Location	chr5:112838681-112838682
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112838066..112839571-chr5:112849174..112852055,2	MCF-7	breast:
2	chr5:112822923..112824962-chr5:112838112..112840774,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171444	Chromatin interaction
ENSG00000047188	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10035558	1.00[ASN][1000 genomes]
rs10040341	1.00[ASN][1000 genomes]
rs10065525	1.00[ASN][1000 genomes]
rs10066289	1.00[ASN][1000 genomes]
rs10066857	1.00[ASN][1000 genomes]
rs10068838	1.00[ASN][1000 genomes]
rs10073066	1.00[ASN][1000 genomes]
rs10074487	1.00[ASN][1000 genomes]
rs10223280	1.00[ASN][1000 genomes]
rs10477496	1.00[ASN][1000 genomes]
rs11948187	1.00[EUR][1000 genomes]
rs11948413	1.00[EUR][1000 genomes]
rs11948437	1.00[EUR][1000 genomes]
rs11948446	1.00[EUR][1000 genomes]
rs11948538	1.00[EUR][1000 genomes]
rs11948830	1.00[EUR][1000 genomes]
rs11949387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11949669	1.00[EUR][1000 genomes]
rs11950791	1.00[EUR][1000 genomes]
rs11953559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11954798	1.00[EUR][1000 genomes]
rs11955591	1.00[EUR][1000 genomes]
rs11956234	1.00[EUR][1000 genomes]
rs11959532	1.00[EUR][1000 genomes]
rs11959955	1.00[EUR][1000 genomes]
rs13355823	1.00[ASN][1000 genomes]
rs13436566	1.00[ASN][1000 genomes]
rs17389402	1.00[ASN][1000 genomes]
rs17390957	1.00[ASN][1000 genomes]
rs28637026	1.00[ASN][1000 genomes]
rs34161832	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4507479	1.00[ASN][1000 genomes]
rs57873991	1.00[ASN][1000 genomes]
rs59007160	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59149164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59254556	1.00[ASN][1000 genomes]
rs59757131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61341835	1.00[EUR][1000 genomes]
rs61641577	1.00[ASN][1000 genomes]
rs62371898	1.00[ASN][1000 genomes]
rs62371934	1.00[ASN][1000 genomes]
rs62371935	1.00[ASN][1000 genomes]
rs62371938	1.00[ASN][1000 genomes]
rs62371939	1.00[ASN][1000 genomes]
rs62373762	1.00[ASN][1000 genomes]
rs62373763	1.00[ASN][1000 genomes]
rs62373766	1.00[ASN][1000 genomes]
rs6861940	1.00[ASN][1000 genomes]
rs6876863	1.00[AMR][1000 genomes]
rs6879776	1.00[ASN][1000 genomes]
rs73247440	1.00[ASN][1000 genomes]
rs7729214	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7731164	1.00[EUR][1000 genomes]
rs9326892	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112827200-112840400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112838000-112839000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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