Variant report

Variant	rs6879776
Chromosome Location	chr5:112752302-112752303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10035558	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10035647	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10037038	1.00[CEU][hapmap]
rs10040341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061462	0.87[YRI][hapmap]
rs10065525	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066289	1.00[ASN][1000 genomes]
rs10066857	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068838	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074487	1.00[ASN][1000 genomes]
rs10076511	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10079321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10213689	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10213826	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10223280	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10477496	1.00[ASN][1000 genomes]
rs11241199	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13181534	0.87[YRI][hapmap]
rs13189050	0.87[YRI][hapmap]
rs13355823	1.00[ASN][1000 genomes]
rs13362511	1.00[AMR][1000 genomes]
rs13436566	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17389402	1.00[ASN][1000 genomes]
rs17390957	1.00[ASN][1000 genomes]
rs28637026	1.00[ASN][1000 genomes]
rs4507479	1.00[ASN][1000 genomes]
rs57873991	1.00[ASN][1000 genomes]
rs58548907	1.00[ASN][1000 genomes]
rs59254556	1.00[ASN][1000 genomes]
rs61641577	1.00[ASN][1000 genomes]
rs62371898	1.00[ASN][1000 genomes]
rs62371934	1.00[ASN][1000 genomes]
rs62371935	1.00[ASN][1000 genomes]
rs62371938	1.00[ASN][1000 genomes]
rs62371939	1.00[ASN][1000 genomes]
rs62373762	1.00[ASN][1000 genomes]
rs62373763	1.00[ASN][1000 genomes]
rs62373766	1.00[ASN][1000 genomes]
rs62374390	0.83[AMR][1000 genomes]
rs6594713	0.87[YRI][hapmap]
rs6861939	0.85[YRI][hapmap]
rs6861940	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887482	0.87[YRI][hapmap]
rs73247440	1.00[ASN][1000 genomes]
rs7702837	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7708947	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7729269	0.87[YRI][hapmap]
rs7731231	1.00[YRI][hapmap]
rs9326885	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9326892	1.00[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112752000-112758200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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