Variant report

Variant	rs9326892
Chromosome Location	chr5:112882338-112882339
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112881042..112882693-chr5:112886312..112889101,2	MCF-7	breast:
2	chr5:112879476..112882434-chr5:112884296..112887058,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10035558	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040341	1.00[ASN][1000 genomes]
rs10063699	1.00[EUR][1000 genomes]
rs10065525	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10066289	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066857	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10068838	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10073066	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10074487	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213689	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10213826	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10223280	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477496	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436566	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17389402	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17390957	1.00[ASN][1000 genomes]
rs28637026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507479	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57873991	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58548907	1.00[ASN][1000 genomes]
rs59254556	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59317861	0.83[AMR][1000 genomes]
rs61641577	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371898	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371934	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371938	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371939	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373762	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373763	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373765	0.87[AFR][1000 genomes]
rs62373766	1.00[ASN][1000 genomes]
rs62373781	0.82[AFR][1000 genomes]
rs6861940	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6879776	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs73247440	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708947	1.00[CEU][hapmap]
rs9763962	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv3448463	chr5:112880753-112882751	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
2	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
3	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
4	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
6	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:112867000-112888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
9	chr5:112867200-112882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
11	chr5:112867200-112904000	Weak transcription	Lung	lung
12	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
13	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
16	chr5:112867400-112888000	Weak transcription	HSMMtube	muscle
17	chr5:112867400-112888800	Weak transcription	Ovary	ovary
18	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
19	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:112867600-112882600	Weak transcription	Fetal Brain Female	brain
21	chr5:112867600-112891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr5:112868000-112893400	Strong transcription	Dnd41	blood
23	chr5:112868400-112893600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr5:112868600-112886400	Strong transcription	Liver	Liver
25	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr5:112869800-112884200	Weak transcription	Fetal Kidney	kidney
28	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr5:112872000-112904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
31	chr5:112873000-112883200	Strong transcription	Fetal Thymus	thymus
32	chr5:112873000-112894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:112873000-112900600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr5:112873800-112883000	Strong transcription	Adipose Nuclei	Adipose
36	chr5:112873800-112888400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr5:112874000-112909600	Weak transcription	Spleen	Spleen
38	chr5:112874400-112902600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:112876000-112882600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr5:112876200-112886400	Strong transcription	Primary B cells from cord blood	blood
42	chr5:112877200-112905800	Weak transcription	Fetal Stomach	stomach
43	chr5:112877400-112892000	Weak transcription	Brain Germinal Matrix	brain
44	chr5:112878000-112888400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr5:112878200-112886000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr5:112878200-112894000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr5:112878400-112886200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:112878600-112886000	Strong transcription	Fetal Intestine Large	intestine
49	chr5:112878800-112886000	Strong transcription	Fetal Muscle Trunk	muscle
50	chr5:112879000-112882800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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