Variant report

Variant	rs62371935
Chromosome Location	chr5:112828234-112828235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112826945..112828680-chr5:112831209..112832875,2	MCF-7	breast:
2	chr5:112823064..112825616-chr5:112827873..112829693,2	MCF-7	breast:
3	chr5:112823623..112825710-chr5:112826639..112829484,3	MCF-7	breast:
4	chr5:112819169..112822042-chr5:112827227..112829109,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171444	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10035558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10063699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10065525	1.00[ASN][1000 genomes]
rs10066289	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066857	1.00[ASN][1000 genomes]
rs10068838	1.00[ASN][1000 genomes]
rs10073066	1.00[ASN][1000 genomes]
rs10074487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436566	1.00[ASN][1000 genomes]
rs17389402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17390957	1.00[ASN][1000 genomes]
rs28637026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57873991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58548907	1.00[ASN][1000 genomes]
rs59254556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61641577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371902	1.00[AMR][1000 genomes]
rs62371934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371938	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373766	1.00[ASN][1000 genomes]
rs62374368	1.00[AMR][1000 genomes]
rs6861940	1.00[ASN][1000 genomes]
rs6879776	1.00[ASN][1000 genomes]
rs73247440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9763962	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112827200-112828600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:112827200-112840400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112827400-112831000	Weak transcription	NHEK	skin

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