Variant report

Variant	rs62374368
Chromosome Location	chr5:112628771-112628772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112608585..112610553-chr5:112626855..112628809,2	MCF-7	breast:
2	chr5:112628328..112630254-chr5:112656025..112657722,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10040341	1.00[AMR][1000 genomes]
rs13355823	1.00[AMR][1000 genomes]
rs62371902	1.00[AMR][1000 genomes]
rs62371935	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024747	chr5:112592710-112679373	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1018078	chr5:112615220-112657404	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112619000-112628800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:112624000-112628800	Weak transcription	Gastric	stomach
3	chr5:112625400-112628800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:112626800-112631400	Active TSS	Ovary	ovary
5	chr5:112627000-112629000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:112627200-112628800	Weak transcription	Aorta	Aorta
7	chr5:112627200-112631200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:112627400-112631000	Active TSS	Psoas Muscle	Psoas
9	chr5:112627800-112629200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:112628000-112628800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr5:112628000-112628800	Active TSS	Right Ventricle	heart
12	chr5:112628000-112629000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr5:112628000-112629000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:112628200-112628800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr5:112628200-112628800	Active TSS	Fetal Kidney	kidney
16	chr5:112628200-112628800	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
17	chr5:112628200-112629000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
18	chr5:112628200-112629000	Flanking Active TSS	NHEK	skin
19	chr5:112628200-112629200	Active TSS	Brain Cingulate Gyrus	brain
20	chr5:112628200-112629200	Flanking Active TSS	HUVEC	blood vessel
21	chr5:112628200-112629400	Active TSS	Placenta	Placenta
22	chr5:112628200-112629600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
23	chr5:112628200-112629600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
24	chr5:112628200-112629800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr5:112628200-112630800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:112628200-112630800	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr5:112628200-112631000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:112628200-112631000	Active TSS	Brain Hippocampus Middle	brain
29	chr5:112628200-112631000	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr5:112628200-112631000	Active TSS	Brain Substantia Nigra	brain
31	chr5:112628200-112631000	Active TSS	Right Atrium	heart
32	chr5:112628200-112631000	Active TSS	Stomach Smooth Muscle	stomach
33	chr5:112628200-112631200	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr5:112628200-112631200	Active TSS	NHDF-Ad	bronchial
35	chr5:112628400-112628800	Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr5:112628400-112629000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
37	chr5:112628400-112629000	Active TSS	Brain Anterior Caudate	brain
38	chr5:112628400-112629200	Flanking Active TSS	Liver	Liver
39	chr5:112628400-112629200	Flanking Active TSS	HMEC	breast
40	chr5:112628400-112629400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:112628400-112629400	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr5:112628400-112629800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:112628400-112629800	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr5:112628400-112631000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr5:112628400-112631000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr5:112628400-112631000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr5:112628400-112631200	Active TSS	Fetal Muscle Trunk	muscle
48	chr5:112628400-112631200	Active TSS	Left Ventricle	heart
49	chr5:112628600-112628800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr5:112628600-112628800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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