Variant report

Variant	rs10065525
Chromosome Location	chr5:112761908-112761909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112757683..112759457-chr5:112761232..112764035,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10035558	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs10035647	1.00[CEU][hapmap]
rs10037038	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10040341	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055889	0.83[AMR][1000 genomes]
rs10066289	1.00[ASN][1000 genomes]
rs10066857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073066	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074487	1.00[ASN][1000 genomes]
rs10079321	1.00[EUR][1000 genomes]
rs10213689	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10213826	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10223280	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10477496	1.00[ASN][1000 genomes]
rs11241199	1.00[CEU][hapmap]
rs13355823	1.00[ASN][1000 genomes]
rs13436566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17389402	1.00[ASN][1000 genomes]
rs17390957	1.00[ASN][1000 genomes]
rs28637026	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4507479	1.00[ASN][1000 genomes]
rs57873991	1.00[ASN][1000 genomes]
rs58548907	1.00[ASN][1000 genomes]
rs59254556	1.00[ASN][1000 genomes]
rs61641577	1.00[ASN][1000 genomes]
rs62371898	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62371934	1.00[ASN][1000 genomes]
rs62371935	1.00[ASN][1000 genomes]
rs62371938	1.00[ASN][1000 genomes]
rs62371939	1.00[ASN][1000 genomes]
rs62373762	1.00[ASN][1000 genomes]
rs62373763	1.00[ASN][1000 genomes]
rs62373766	1.00[ASN][1000 genomes]
rs6861940	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879776	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73247440	1.00[ASN][1000 genomes]
rs7708947	1.00[CEU][hapmap]
rs9326885	1.00[EUR][1000 genomes]
rs9326892	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112761000-112763000	Enhancers	HMEC	breast
2	chr5:112761000-112763400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112761400-112762000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112761400-112764400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:112761400-112764800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:112761600-112762000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:112761600-112762000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:112761600-112762000	Enhancers	Esophagus	oesophagus
9	chr5:112761600-112762600	Flanking Active TSS	NHEK	skin

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