Variant report

Variant	rs10079321
Chromosome Location	chr5:112743328-112743329
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10035558	1.00[AFR][1000 genomes]
rs10035647	1.00[AMR][1000 genomes]
rs10040341	1.00[EUR][1000 genomes]
rs10065525	1.00[EUR][1000 genomes]
rs10066857	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10068838	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10073066	1.00[EUR][1000 genomes]
rs10076511	0.81[AFR][1000 genomes]
rs10213689	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10213826	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13362511	1.00[AMR][1000 genomes]
rs13436566	1.00[EUR][1000 genomes]
rs62374390	0.83[AMR][1000 genomes]
rs6861940	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6879776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7702837	0.81[AFR][1000 genomes]
rs7708947	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9326885	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112724400-112751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112741400-112746400	Weak transcription	Pancreas	Pancrea
3	chr5:112742200-112743800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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