Variant report

Variant	rs10213826
Chromosome Location	chr5:112736865-112736866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10035558	1.00[CEU][hapmap]
rs10035647	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10037038	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs10040341	1.00[EUR][1000 genomes]
rs10065525	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10066857	1.00[EUR][1000 genomes]
rs10068838	1.00[EUR][1000 genomes]
rs10069434	1.00[ASN][1000 genomes]
rs10073066	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10076511	1.00[ASN][1000 genomes]
rs10079321	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10213689	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223280	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10519339	1.00[ASN][1000 genomes]
rs10519340	1.00[ASN][1000 genomes]
rs10519342	1.00[ASN][1000 genomes]
rs11241199	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs13362511	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13436566	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17135464	1.00[ASN][1000 genomes]
rs17135493	1.00[ASN][1000 genomes]
rs17135511	1.00[ASN][1000 genomes]
rs1968992	1.00[ASN][1000 genomes]
rs2091802	1.00[ASN][1000 genomes]
rs28637026	0.86[AFR][1000 genomes]
rs55967427	1.00[ASN][1000 genomes]
rs56104704	1.00[ASN][1000 genomes]
rs56410005	1.00[ASN][1000 genomes]
rs57696719	1.00[ASN][1000 genomes]
rs58069204	1.00[ASN][1000 genomes]
rs58879623	1.00[ASN][1000 genomes]
rs59673184	1.00[ASN][1000 genomes]
rs59807191	1.00[ASN][1000 genomes]
rs60185446	1.00[ASN][1000 genomes]
rs60590719	1.00[ASN][1000 genomes]
rs60636636	1.00[ASN][1000 genomes]
rs61692685	1.00[ASN][1000 genomes]
rs62371898	1.00[AFR][1000 genomes]
rs62374390	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs634261	1.00[ASN][1000 genomes]
rs6859436	1.00[ASN][1000 genomes]
rs6861940	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6874561	1.00[ASN][1000 genomes]
rs6878329	1.00[ASN][1000 genomes]
rs6879776	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899178	1.00[ASN][1000 genomes]
rs73244754	1.00[ASN][1000 genomes]
rs73244755	1.00[ASN][1000 genomes]
rs73244756	1.00[ASN][1000 genomes]
rs73244763	1.00[ASN][1000 genomes]
rs73244764	1.00[ASN][1000 genomes]
rs73244773	1.00[ASN][1000 genomes]
rs73244797	1.00[ASN][1000 genomes]
rs73246617	1.00[ASN][1000 genomes]
rs7702837	1.00[ASN][1000 genomes]
rs7708947	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7710138	1.00[ASN][1000 genomes]
rs7723474	1.00[ASN][1000 genomes]
rs9326885	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326892	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112724400-112751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112730200-112738200	Weak transcription	HMEC	breast
3	chr5:112734400-112739200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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