The 2.0 version of rSNPBase

Variant report

Variant rs17135493
Chromosome Location chr5:112584311-112584312
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112557200-112585800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr5:112572400-112590400 Weak transcription Liver Liver
3 chr5:112572600-112585800 Weak transcription Pancreas Pancrea
4 chr5:112575400-112585400 Weak transcription Colon Smooth Muscle Colon
5 chr5:112578800-112584800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr5:112579600-112585400 Weak transcription Esophagus oesophagus
7 chr5:112579600-112587000 Weak transcription Aorta Aorta
8 chr5:112580600-112597400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
9 chr5:112581400-112584400 Enhancers Left Ventricle heart
10 chr5:112581400-112590800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr5:112581600-112585000 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr5:112582200-112585200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr5:112582200-112585400 Weak transcription ES-WA7 Cell Line embryonic stem cell
14 chr5:112582200-112586400 Weak transcription HMEC breast
15 chr5:112582400-112585000 Weak transcription Rectal Smooth Muscle rectum
16 chr5:112582400-112585400 Weak transcription Fetal Kidney kidney
17 chr5:112582600-112585200 Weak transcription HUVEC blood vessel
18 chr5:112582600-112585600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr5:112582600-112585800 Weak transcription Fetal Lung lung
20 chr5:112582800-112584400 Weak transcription Stomach Smooth Muscle stomach
21 chr5:112582800-112585200 Weak transcription Muscle Satellite Cultured Cells --
22 chr5:112582800-112585400 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr5:112582800-112585400 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr5:112582800-112585400 Weak transcription Stomach Mucosa stomach
25 chr5:112582800-112585600 Weak transcription HSMM muscle
26 chr5:112582800-112585800 Weak transcription HSMMtube muscle
27 chr5:112582800-112586000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr5:112582800-112586000 Weak transcription Placenta Placenta
29 chr5:112582800-112586400 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr5:112582800-112586400 Weak transcription NHEK skin
31 chr5:112582800-112601000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr5:112583000-112584400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr5:112583000-112584400 Weak transcription Osteobl bone
34 chr5:112583000-112584800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr5:112583000-112585000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr5:112583000-112585200 Weak transcription Fetal Stomach stomach
37 chr5:112583000-112585400 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr5:112583000-112585400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr5:112583000-112585400 Weak transcription NHDF-Ad bronchial
40 chr5:112583000-112585600 Weak transcription Adipose Nuclei Adipose
41 chr5:112583000-112586200 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr5:112583000-112586400 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr5:112583000-112604600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
44 chr5:112583200-112585800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr5:112583200-112586400 Weak transcription iPS-18 Cell Line embryonic stem cell
46 chr5:112583200-112587000 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr5:112583600-112585200 Weak transcription HUES6 Cell Line embryonic stem cell
48 chr5:112583600-112585200 Weak transcription Right Atrium heart
49 chr5:112583600-112585800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr5:112583600-112586000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015