Variant report

Variant rs6878329
Chromosome Location chr5:112609392-112609393
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112586600-112623600 Weak transcription Pancreas Pancrea
2 chr5:112587600-112617000 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr5:112589200-112610600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr5:112600200-112618000 Weak transcription Fetal Kidney kidney
5 chr5:112600800-112610600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr5:112600800-112610800 Enhancers iPS-18 Cell Line embryonic stem cell
7 chr5:112601000-112612400 Enhancers HUES48 Cell Line embryonic stem cell
8 chr5:112601400-112611200 Enhancers Pancreatic Islets Pancreatic Islet
9 chr5:112602200-112616600 Weak transcription Brain Hippocampus Middle brain
10 chr5:112602600-112609800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr5:112603000-112611800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr5:112603000-112616800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr5:112603200-112610600 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr5:112603800-112612200 Enhancers iPS-15b Cell Line embryonic stem cell
15 chr5:112604200-112609600 Weak transcription Right Ventricle heart
16 chr5:112604200-112610400 Enhancers HUES64 Cell Line embryonic stem cell
17 chr5:112604200-112610600 Weak transcription Psoas Muscle Psoas
18 chr5:112604400-112612600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
19 chr5:112604600-112612600 Enhancers Cortex derived primary cultured neurospheres brain
20 chr5:112605000-112609400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr5:112605000-112611400 Enhancers HUVEC blood vessel
22 chr5:112605400-112610400 Enhancers iPS-20b Cell Line embryonic stem cell
23 chr5:112605400-112612400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
24 chr5:112605800-112609400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr5:112605800-112609600 Weak transcription Dnd41 blood
26 chr5:112606200-112610600 Weak transcription Stomach Smooth Muscle stomach
27 chr5:112606400-112609600 Weak transcription Left Ventricle heart
28 chr5:112606600-112614000 Weak transcription ES-WA7 Cell Line embryonic stem cell
29 chr5:112607000-112610600 Weak transcription Fetal Stomach stomach
30 chr5:112607200-112609600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr5:112607200-112610800 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr5:112607200-112614400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr5:112607400-112610000 Genic enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr5:112607400-112610600 Weak transcription Liver Liver
35 chr5:112607600-112610200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr5:112607600-112610600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr5:112607600-112611000 Enhancers NHEK skin
38 chr5:112607600-112611600 Weak transcription Right Atrium heart
39 chr5:112607600-112616200 Weak transcription Esophagus oesophagus
40 chr5:112608000-112609400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr5:112608000-112609600 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr5:112608000-112628200 Weak transcription HMEC breast
43 chr5:112608200-112609600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr5:112608200-112611400 Enhancers Adipose Nuclei Adipose
45 chr5:112608200-112612200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
46 chr5:112608400-112610000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr5:112608400-112612000 Enhancers H1 Cell Line embryonic stem cell
48 chr5:112608400-112612000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
49 chr5:112608400-112612200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr5:112608600-112609600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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