The 2.0 version of rSNPBase

Variant report

Variant rs6859436
Chromosome Location chr5:112588430-112588431
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112572400-112590400 Weak transcription Liver Liver
2 chr5:112580600-112597400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr5:112581400-112590800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:112582800-112601000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr5:112583000-112604600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr5:112583600-112599800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr5:112585000-112589000 Enhancers Right Ventricle heart
8 chr5:112585000-112589400 Enhancers Ovary ovary
9 chr5:112585200-112589400 Enhancers Left Ventricle heart
10 chr5:112586000-112589000 Weak transcription Esophagus oesophagus
11 chr5:112586000-112590800 Weak transcription Small Intestine intestine
12 chr5:112586000-112593000 Weak transcription Brain Angular Gyrus brain
13 chr5:112586400-112590800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr5:112586600-112591200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr5:112586600-112598800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr5:112586600-112623600 Weak transcription Pancreas Pancrea
17 chr5:112586800-112590800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr5:112586800-112592000 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr5:112586800-112598800 Weak transcription Fetal Kidney kidney
20 chr5:112586800-112599400 Weak transcription Cortex derived primary cultured neurospheres brain
21 chr5:112587000-112589200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
22 chr5:112587000-112590200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr5:112587000-112594600 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr5:112587200-112591400 Weak transcription NHDF-Ad bronchial
25 chr5:112587200-112599400 Weak transcription iPS-18 Cell Line embryonic stem cell
26 chr5:112587600-112588800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr5:112587600-112591400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr5:112587600-112617000 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr5:112587800-112589400 Enhancers Lung lung
30 chr5:112588000-112588800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr5:112588000-112590200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr5:112588000-112591400 Weak transcription Fetal Heart heart
33 chr5:112588000-112591400 Weak transcription Fetal Stomach stomach
34 chr5:112588000-112592000 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr5:112588000-112592400 Weak transcription Psoas Muscle Psoas
36 chr5:112588000-112594800 Weak transcription NHEK skin
37 chr5:112588000-112598600 Weak transcription Fetal Lung lung
38 chr5:112588000-112601200 Weak transcription HMEC breast
39 chr5:112588200-112591000 Weak transcription Adipose Nuclei Adipose
40 chr5:112588200-112594800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr5:112588400-112588600 ZNF genes & repeats Fetal Muscle Leg muscle
42 chr5:112588400-112588800 Weak transcription Right Atrium heart
43 chr5:112588400-112589000 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015