Variant report

Variant	rs73244756
Chromosome Location	chr5:112561746-112561747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10035647	1.00[ASN][1000 genomes]
rs10037038	1.00[ASN][1000 genomes]
rs10069434	1.00[ASN][1000 genomes]
rs10076511	1.00[ASN][1000 genomes]
rs10213689	1.00[ASN][1000 genomes]
rs10213826	1.00[ASN][1000 genomes]
rs10519339	1.00[ASN][1000 genomes]
rs10519340	1.00[ASN][1000 genomes]
rs10519342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241199	1.00[ASN][1000 genomes]
rs11951541	1.00[ASN][1000 genomes]
rs11958840	1.00[ASN][1000 genomes]
rs13362511	1.00[ASN][1000 genomes]
rs17135464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17135493	1.00[ASN][1000 genomes]
rs17135511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1968992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2091802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55967427	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56104704	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56410005	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57602920	1.00[ASN][1000 genomes]
rs57696719	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57948635	1.00[ASN][1000 genomes]
rs58069204	1.00[ASN][1000 genomes]
rs58237028	1.00[ASN][1000 genomes]
rs58879623	1.00[ASN][1000 genomes]
rs59101992	1.00[ASN][1000 genomes]
rs59673184	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59807191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60185446	1.00[ASN][1000 genomes]
rs60590719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60636636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60727695	1.00[ASN][1000 genomes]
rs61643643	1.00[ASN][1000 genomes]
rs61692685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62374390	1.00[ASN][1000 genomes]
rs634261	1.00[ASN][1000 genomes]
rs6859436	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859619	1.00[ASN][1000 genomes]
rs6874561	1.00[ASN][1000 genomes]
rs6878329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899178	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244736	1.00[ASN][1000 genomes]
rs73244737	1.00[ASN][1000 genomes]
rs73244738	1.00[ASN][1000 genomes]
rs73244740	1.00[ASN][1000 genomes]
rs73244742	1.00[ASN][1000 genomes]
rs73244743	1.00[ASN][1000 genomes]
rs73244754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244797	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246617	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702837	1.00[ASN][1000 genomes]
rs7708947	1.00[ASN][1000 genomes]
rs7710138	1.00[ASN][1000 genomes]
rs7723474	1.00[ASN][1000 genomes]
rs9326885	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112548400-112581800	Weak transcription	Fetal Kidney	kidney
2	chr5:112554200-112564200	Weak transcription	Small Intestine	intestine
3	chr5:112555000-112566800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:112556600-112561800	Enhancers	Ovary	ovary
5	chr5:112557200-112585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:112557400-112561800	Weak transcription	NHDF-Ad	bronchial
7	chr5:112557400-112564800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:112557600-112566400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:112557600-112566400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:112557800-112561800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:112557800-112562000	Weak transcription	NHEK	skin
12	chr5:112557800-112565200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:112557800-112566200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:112557800-112566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:112557800-112566400	Weak transcription	HMEC	breast
16	chr5:112557800-112566600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr5:112558800-112568000	Weak transcription	Psoas Muscle	Psoas
18	chr5:112559000-112564800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:112559000-112568000	Weak transcription	Aorta	Aorta
20	chr5:112559000-112570000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:112559000-112571200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:112559200-112562400	Enhancers	HUVEC	blood vessel
23	chr5:112559600-112566400	Weak transcription	Adipose Nuclei	Adipose
24	chr5:112559800-112565000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:112560000-112565400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:112560200-112568000	Weak transcription	Fetal Muscle Leg	muscle
27	chr5:112560400-112565400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:112560600-112562200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr5:112560600-112566400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:112560800-112561800	Weak transcription	NH-A	brain
31	chr5:112560800-112562200	Enhancers	Right Atrium	heart
32	chr5:112560800-112564800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr5:112560800-112568400	Weak transcription	Fetal Stomach	stomach
34	chr5:112560800-112569000	Weak transcription	Osteobl	bone
35	chr5:112561000-112565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr5:112561000-112566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr5:112561200-112570400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:112561400-112561800	Enhancers	Left Ventricle	heart
39	chr5:112561400-112562000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:112561400-112568800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:112561600-112561800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:112561600-112562000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:112561600-112562200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:112561600-112564800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:112561600-112565600	Weak transcription	Fetal Heart	heart
46	chr5:112561600-112575000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links