The 2.0 version of rSNPBase

Variant report

Variant rs11958840
Chromosome Location chr5:112537223-112537224
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112515800-112538000 Weak transcription Fetal Kidney kidney
2 chr5:112518600-112538600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr5:112522000-112538800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr5:112522600-112541000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr5:112527400-112538800 Weak transcription Esophagus oesophagus
6 chr5:112528600-112538600 Weak transcription Stomach Smooth Muscle stomach
7 chr5:112529000-112538800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr5:112530200-112538800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr5:112531400-112538600 Weak transcription Placenta Placenta
10 chr5:112531800-112541000 Weak transcription Aorta Aorta
11 chr5:112532200-112538600 Weak transcription Fetal Muscle Leg muscle
12 chr5:112533800-112538600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr5:112533800-112541400 Weak transcription Spleen Spleen
14 chr5:112534000-112538000 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr5:112534400-112537400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:112534400-112538600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr5:112535200-112537600 Enhancers Left Ventricle heart
18 chr5:112535200-112538600 Enhancers NHEK skin
19 chr5:112535400-112537600 Weak transcription Brain Germinal Matrix brain
20 chr5:112535400-112538600 Weak transcription Brain Hippocampus Middle brain
21 chr5:112535600-112537400 Weak transcription Fetal Lung lung
22 chr5:112535600-112538200 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr5:112535600-112538600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr5:112535600-112538600 Weak transcription Osteobl bone
25 chr5:112535600-112538800 Weak transcription Brain Cingulate Gyrus brain
26 chr5:112535600-112538800 Weak transcription HMEC breast
27 chr5:112535600-112540400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr5:112535600-112540600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr5:112535800-112537600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr5:112535800-112537800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr5:112535800-112538000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr5:112535800-112538400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr5:112535800-112540600 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr5:112536000-112537400 Weak transcription Adipose Nuclei Adipose
35 chr5:112536000-112537600 Weak transcription H1 Cell Line embryonic stem cell
36 chr5:112536000-112537600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr5:112536000-112538400 Weak transcription iPS-15b Cell Line embryonic stem cell
38 chr5:112536000-112538600 Weak transcription Brain Anterior Caudate brain
39 chr5:112536000-112538600 Weak transcription Brain Substantia Nigra brain
40 chr5:112536200-112537600 Weak transcription H9 Cell Line embryonic stem cell
41 chr5:112536200-112537600 Weak transcription Right Atrium heart
42 chr5:112536200-112538000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
43 chr5:112536200-112538000 Weak transcription Brain Angular Gyrus brain
44 chr5:112536200-112538600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr5:112536200-112538600 Weak transcription NH-A brain
46 chr5:112536200-112538800 Weak transcription Lung lung
47 chr5:112536200-112538800 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr5:112536200-112539000 Weak transcription NHDF-Ad bronchial
49 chr5:112536200-112540200 Weak transcription Brain Inferior Temporal Lobe brain
50 chr5:112536400-112537400 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015