The 2.0 version of rSNPBase

Variant report

Variant rs10519339
Chromosome Location chr5:112546477-112546478
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:112539000-112547200 Weak transcription Fetal Muscle Leg muscle
2 chr5:112539200-112549200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr5:112539200-112554000 Weak transcription Fetal Muscle Trunk muscle
4 chr5:112539400-112548000 Weak transcription H1 Cell Line embryonic stem cell
5 chr5:112539400-112548000 Weak transcription Fetal Stomach stomach
6 chr5:112539800-112546800 Enhancers Fetal Heart heart
7 chr5:112539800-112548200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr5:112540000-112547800 Weak transcription HUES48 Cell Line embryonic stem cell
9 chr5:112540000-112548000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr5:112540400-112548800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr5:112540600-112547200 Weak transcription Brain Inferior Temporal Lobe brain
12 chr5:112540600-112548000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr5:112540800-112547800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr5:112540800-112548800 Weak transcription Duodenum Mucosa Duodenum
15 chr5:112540800-112553400 Weak transcription Brain Angular Gyrus brain
16 chr5:112541000-112547800 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr5:112541200-112548000 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr5:112541200-112548200 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr5:112541600-112547200 Weak transcription Brain Anterior Caudate brain
20 chr5:112541800-112547000 Weak transcription Fetal Lung lung
21 chr5:112541800-112547200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr5:112541800-112547200 Weak transcription Adipose Nuclei Adipose
23 chr5:112541800-112548200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr5:112541800-112550400 Weak transcription Esophagus oesophagus
25 chr5:112542000-112546600 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr5:112542000-112547200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr5:112542000-112547800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr5:112542000-112548000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr5:112542000-112553400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr5:112542000-112553400 Weak transcription Lung lung
31 chr5:112543600-112547600 Weak transcription Brain Cingulate Gyrus brain
32 chr5:112543800-112547000 Weak transcription Brain Substantia Nigra brain
33 chr5:112543800-112547200 Weak transcription iPS-20b Cell Line embryonic stem cell
34 chr5:112543800-112547600 Weak transcription Liver Liver
35 chr5:112543800-112548000 Weak transcription HMEC breast
36 chr5:112543800-112548200 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr5:112543800-112548200 Weak transcription Brain Hippocampus Middle brain
38 chr5:112544000-112548000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr5:112544200-112546800 Weak transcription Psoas Muscle Psoas
40 chr5:112544200-112548000 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr5:112544200-112548000 Weak transcription Left Ventricle heart
42 chr5:112544200-112548000 Weak transcription Right Atrium heart
43 chr5:112544800-112546800 Weak transcription Fetal Kidney kidney
44 chr5:112544800-112548200 Weak transcription ES-WA7 Cell Line embryonic stem cell
45 chr5:112545200-112546800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr5:112545800-112546800 Weak transcription Ovary ovary
47 chr5:112545800-112548000 Weak transcription Right Ventricle heart
48 chr5:112546200-112547400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr5:112546200-112548400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
50 chr5:112546400-112547600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015