Variant report

Variant	rs10038017
Chromosome Location	chr5:112649001-112649002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:32159312..32160248-chr5:112648833..112649616,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10037836	0.86[ASN][1000 genomes]
rs10037845	0.86[ASN][1000 genomes]
rs10040533	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10040770	1.00[EUR][1000 genomes]
rs10043512	0.86[ASN][1000 genomes]
rs10044201	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10051109	0.94[EUR][1000 genomes]
rs10056104	0.86[ASN][1000 genomes]
rs10058535	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10059129	0.94[EUR][1000 genomes]
rs10070884	0.86[ASN][1000 genomes]
rs10070990	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10074346	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10075447	0.94[EUR][1000 genomes]
rs10478121	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10519344	1.00[EUR][1000 genomes]
rs11953478	0.94[EUR][1000 genomes]
rs11954016	0.94[EUR][1000 genomes]
rs11954410	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11958613	0.86[ASN][1000 genomes]
rs11958734	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12108831	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356396	0.81[EUR][1000 genomes]
rs13361059	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13361060	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13362158	0.94[EUR][1000 genomes]
rs17135493	0.85[EUR][1000 genomes]
rs17135568	0.86[ASN][1000 genomes]
rs17135570	0.86[ASN][1000 genomes]
rs1882620	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068922	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28462299	0.86[ASN][1000 genomes]
rs28494592	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55794576	0.94[EUR][1000 genomes]
rs56875463	0.94[EUR][1000 genomes]
rs57727389	0.86[ASN][1000 genomes]
rs61560548	0.86[ASN][1000 genomes]
rs6868620	0.86[ASN][1000 genomes]
rs6874313	0.86[ASN][1000 genomes]
rs6874561	0.85[EUR][1000 genomes]
rs73779001	1.00[EUR][1000 genomes]
rs73779022	0.94[EUR][1000 genomes]
rs73781511	1.00[ASN][1000 genomes]
rs73781512	0.86[ASN][1000 genomes]
rs73781513	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73781514	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7700940	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7718459	0.86[ASN][1000 genomes]
rs7719166	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7720189	0.86[ASN][1000 genomes]
rs7736171	0.86[ASN][1000 genomes]
rs9285877	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9326881	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9326882	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9326883	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024747	chr5:112592710-112679373	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1018078	chr5:112615220-112657404	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv528805	chr5:112641650-112650751	Enhancers Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112647800-112649200	Enhancers	HSMM	muscle
2	chr5:112648000-112649200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112648000-112649200	Enhancers	Hela-S3	cervix
4	chr5:112648000-112649200	Enhancers	HMEC	breast
5	chr5:112648200-112649200	Enhancers	HUVEC	blood vessel
6	chr5:112648800-112666600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:112649000-112649400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:112649000-112649800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links