Variant report

Variant	rs10051109
Chromosome Location	chr5:112758874-112758875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112757683..112759457-chr5:112761232..112764035,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10038017	0.94[EUR][1000 genomes]
rs10038504	0.83[YRI][hapmap]
rs10040533	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040770	0.94[EUR][1000 genomes]
rs10044201	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10053052	0.83[YRI][hapmap]
rs10053157	0.82[YRI][hapmap]
rs10055327	0.83[YRI][hapmap]
rs10057264	0.83[YRI][hapmap]
rs10058535	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10059129	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070990	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10074346	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10075447	1.00[EUR][1000 genomes]
rs10077020	1.00[CEU][hapmap]
rs10478121	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519344	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11952758	0.82[YRI][hapmap]
rs11953478	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11954016	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11954410	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11958734	0.94[EUR][1000 genomes]
rs11960559	0.80[YRI][hapmap]
rs12108831	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13356396	0.85[EUR][1000 genomes]
rs13361059	0.94[EUR][1000 genomes]
rs13361060	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13362158	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1882620	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2068922	0.94[EUR][1000 genomes]
rs2303718	1.00[CEU][hapmap]
rs28494592	0.94[EUR][1000 genomes]
rs55794576	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56875463	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6871995	1.00[CEU][hapmap]
rs73779001	0.94[EUR][1000 genomes]
rs73779022	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73781513	0.94[EUR][1000 genomes]
rs73781514	0.94[EUR][1000 genomes]
rs7700940	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7719166	1.00[EUR][1000 genomes]
rs9285877	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9326881	0.94[EUR][1000 genomes]
rs9326882	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9326883	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112753600-112761000	Weak transcription	HMEC	breast
2	chr5:112758000-112761400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:112758200-112759000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:112758200-112759000	Enhancers	NHEK	skin
5	chr5:112758200-112759200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:112758200-112759200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:112758200-112759400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:112758600-112759400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:112758800-112759000	Enhancers	Fetal Heart	heart

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