Variant report

Variant	rs10059129
Chromosome Location	chr5:112762110-112762111
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112757683..112759457-chr5:112761232..112764035,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10038017	0.94[EUR][1000 genomes]
rs10040533	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040770	0.94[EUR][1000 genomes]
rs10044201	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10051109	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10058535	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10070990	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10074346	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10075447	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10478121	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519344	0.94[EUR][1000 genomes]
rs11953478	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11954016	1.00[EUR][1000 genomes]
rs11954410	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11958734	0.94[EUR][1000 genomes]
rs12108831	0.94[EUR][1000 genomes]
rs13356396	0.85[EUR][1000 genomes]
rs13361059	0.94[EUR][1000 genomes]
rs13361060	0.94[EUR][1000 genomes]
rs13362158	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1882620	0.94[EUR][1000 genomes]
rs2068922	0.94[EUR][1000 genomes]
rs28494592	0.94[EUR][1000 genomes]
rs55794576	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56875463	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73779001	0.94[EUR][1000 genomes]
rs73779022	1.00[EUR][1000 genomes]
rs73781513	0.94[EUR][1000 genomes]
rs73781514	0.94[EUR][1000 genomes]
rs7700940	0.84[EUR][1000 genomes]
rs7719166	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9285877	0.94[EUR][1000 genomes]
rs9326881	0.94[EUR][1000 genomes]
rs9326882	0.94[EUR][1000 genomes]
rs9326883	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112761000-112763000	Enhancers	HMEC	breast
2	chr5:112761000-112763400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:112761400-112764400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:112761400-112764800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:112761600-112762600	Flanking Active TSS	NHEK	skin
6	chr5:112762000-112762400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:112762000-112786000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links