Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10038017	0.81[EUR][1000 genomes]
rs10040533	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10040770	0.81[EUR][1000 genomes]
rs10044201	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10051109	0.85[EUR][1000 genomes]
rs10058535	0.85[EUR][1000 genomes]
rs10059129	0.85[EUR][1000 genomes]
rs10070990	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10074346	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10075447	0.85[EUR][1000 genomes]
rs10478121	0.85[EUR][1000 genomes]
rs10519344	0.81[EUR][1000 genomes]
rs11953478	0.85[EUR][1000 genomes]
rs11954016	0.85[EUR][1000 genomes]
rs11954410	0.85[EUR][1000 genomes]
rs11958734	0.81[EUR][1000 genomes]
rs12108831	0.81[EUR][1000 genomes]
rs13361059	0.81[EUR][1000 genomes]
rs13361060	0.81[EUR][1000 genomes]
rs13362158	0.85[EUR][1000 genomes]
rs1882620	0.81[EUR][1000 genomes]
rs2068922	0.81[EUR][1000 genomes]
rs28494592	0.81[EUR][1000 genomes]
rs55794576	0.85[EUR][1000 genomes]
rs56875463	0.85[EUR][1000 genomes]
rs73779001	0.81[EUR][1000 genomes]
rs73779022	0.85[EUR][1000 genomes]
rs73781513	0.81[EUR][1000 genomes]
rs73781514	0.81[EUR][1000 genomes]
rs7719166	0.85[EUR][1000 genomes]
rs9285877	0.81[EUR][1000 genomes]
rs9326881	0.81[EUR][1000 genomes]
rs9326882	0.81[EUR][1000 genomes]
rs9326883	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112724400-112751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:112730200-112738200	Weak transcription	HMEC	breast
3	chr5:112734400-112739200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: