Variant report

Variant	rs62371934
Chromosome Location	chr5:112822389-112822390
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112815129..112817278-chr5:112821546..112824225,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040341	1.00[ASN][1000 genomes]
rs10063699	1.00[EUR][1000 genomes]
rs10065525	1.00[ASN][1000 genomes]
rs10066289	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066857	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10068838	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10073066	1.00[ASN][1000 genomes]
rs10074487	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436566	1.00[ASN][1000 genomes]
rs17389402	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17390957	1.00[ASN][1000 genomes]
rs28637026	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507479	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57873991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58548907	1.00[ASN][1000 genomes]
rs59254556	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59317861	1.00[AMR][1000 genomes]
rs61641577	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373762	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373766	1.00[ASN][1000 genomes]
rs6861940	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6879776	1.00[ASN][1000 genomes]
rs73247440	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9763962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112810200-112823000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:112813400-112822800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:112820600-112823000	Weak transcription	Right Ventricle	heart
4	chr5:112821800-112822400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:112821800-112823000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:112822000-112824400	Active TSS	HMEC	breast
7	chr5:112822200-112822400	Flanking Active TSS	NHEK	skin
8	chr5:112822200-112822600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:112822200-112822800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:112822200-112824600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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