Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10035558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10063699	1.00[EUR][1000 genomes]
rs10066289	1.00[EUR][1000 genomes]
rs10066857	1.00[AMR][1000 genomes]
rs10068838	1.00[AMR][1000 genomes]
rs10074487	1.00[EUR][1000 genomes]
rs10223280	1.00[EUR][1000 genomes]
rs10477496	1.00[EUR][1000 genomes]
rs13355823	1.00[EUR][1000 genomes]
rs17389402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28637026	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4507479	1.00[EUR][1000 genomes]
rs57873991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59254556	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59317861	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61641577	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62371898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62371934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62371935	1.00[EUR][1000 genomes]
rs62371938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62371939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373762	1.00[EUR][1000 genomes]
rs62373763	1.00[EUR][1000 genomes]
rs6861940	1.00[AMR][1000 genomes]
rs73247440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9326892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112786200-112810000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:112788000-112808000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112788200-112807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112794800-112810000	Weak transcription	NHEK	skin
5	chr5:112801800-112806800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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