Variant report

Variant	rs62373763
Chromosome Location	chr5:112881683-112881684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112881042..112882693-chr5:112886312..112889101,2	MCF-7	breast:
2	chr5:112879476..112882434-chr5:112884296..112887058,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10035558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040341	1.00[ASN][1000 genomes]
rs10055889	0.82[AFR][1000 genomes]
rs10063699	1.00[EUR][1000 genomes]
rs10065525	1.00[ASN][1000 genomes]
rs10066289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066857	1.00[ASN][1000 genomes]
rs10068838	1.00[ASN][1000 genomes]
rs10073066	1.00[ASN][1000 genomes]
rs10074487	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10223280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436566	1.00[ASN][1000 genomes]
rs17389402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17390957	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28637026	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507479	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57873991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58548907	1.00[ASN][1000 genomes]
rs59254556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60536991	0.82[AFR][1000 genomes]
rs61641577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373762	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373766	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6861940	1.00[ASN][1000 genomes]
rs6879776	1.00[ASN][1000 genomes]
rs73247440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9763962	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv2540445	chr5:112880688-112882145	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3448463	chr5:112880753-112882751	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2162364	chr5:112881233-112881948	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3322239	chr5:112881253-112882251	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3469726	chr5:112881296-112881841	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3520288	chr5:112881318-112881863	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3520290	chr5:112881336-112881833	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3389159	chr5:112881342-112881791	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3520291	chr5:112881344-112881773	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3469728	chr5:112881350-112881830	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3469727	chr5:112881351-112881807	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3412319	chr5:112881362-112881790	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3520289	chr5:112881363-112881781	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3469731	chr5:112881376-112881764	Genic enhancers Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3469725	chr5:112881401-112881744	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3520287	chr5:112881415-112881736	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1743798	chr5:112881416-112881736	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv327129	chr5:112881417-112881736	Strong transcription Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3469732	chr5:112881417-112881751	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3520292	chr5:112881417-112881751	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv327138	chr5:112881431-112881750	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
2	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
3	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
4	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
7	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
8	chr5:112858800-112882000	Weak transcription	Brain Substantia Nigra	brain
9	chr5:112858800-112882200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:112860400-112882200	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:112864200-112882200	Weak transcription	Stomach Mucosa	stomach
13	chr5:112867000-112882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:112867000-112888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
16	chr5:112867200-112882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
18	chr5:112867200-112904000	Weak transcription	Lung	lung
19	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
20	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
23	chr5:112867400-112882200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:112867400-112888000	Weak transcription	HSMMtube	muscle
25	chr5:112867400-112888800	Weak transcription	Ovary	ovary
26	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
27	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr5:112867600-112882600	Weak transcription	Fetal Brain Female	brain
29	chr5:112867600-112891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:112868000-112893400	Strong transcription	Dnd41	blood
31	chr5:112868400-112893600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr5:112868600-112886400	Strong transcription	Liver	Liver
33	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:112869800-112884200	Weak transcription	Fetal Kidney	kidney
36	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr5:112871200-112882200	Weak transcription	NH-A	brain
38	chr5:112872000-112904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
40	chr5:112872200-112882000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr5:112873000-112883200	Strong transcription	Fetal Thymus	thymus
42	chr5:112873000-112894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr5:112873000-112900600	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr5:112873800-112883000	Strong transcription	Adipose Nuclei	Adipose
46	chr5:112873800-112888400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:112874000-112909600	Weak transcription	Spleen	Spleen
48	chr5:112874400-112902600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr5:112876000-112882600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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