Variant report

Variant	rs10074487
Chromosome Location	chr5:112908474-112908475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040341	1.00[ASN][1000 genomes]
rs10055889	0.86[AFR][1000 genomes]
rs10063699	1.00[EUR][1000 genomes]
rs10065525	1.00[ASN][1000 genomes]
rs10066289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066857	1.00[ASN][1000 genomes]
rs10068838	1.00[ASN][1000 genomes]
rs10073066	1.00[ASN][1000 genomes]
rs10223280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13436566	1.00[ASN][1000 genomes]
rs17389402	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17390957	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28637026	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972687	0.88[AFR][1000 genomes]
rs2972688	0.88[AFR][1000 genomes]
rs4507479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57873991	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58548907	1.00[ASN][1000 genomes]
rs59254556	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60536991	0.90[AFR][1000 genomes]
rs61641577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371898	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371934	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371935	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62371939	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62373766	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6861940	1.00[ASN][1000 genomes]
rs6879776	1.00[ASN][1000 genomes]
rs73247440	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326892	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9763962	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
2	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
5	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
6	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
11	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:112874000-112909600	Weak transcription	Spleen	Spleen
13	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:112882800-112909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:112886600-112911200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr5:112889400-112930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:112889800-112909600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr5:112889800-112910000	Weak transcription	HSMMtube	muscle
19	chr5:112890600-112915800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:112891600-112912600	Weak transcription	Stomach Mucosa	stomach
21	chr5:112892800-112915000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:112894400-112911800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr5:112894600-112910800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:112895000-112911400	Strong transcription	Dnd41	blood
25	chr5:112896800-112909800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:112896800-112909800	Weak transcription	NHEK	skin
27	chr5:112898000-112909000	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:112898200-112921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr5:112898400-112909600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:112898600-112909800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:112899400-112929400	Weak transcription	HepG2	liver
32	chr5:112899800-112909800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:112900400-112915800	Weak transcription	HUVEC	blood vessel
34	chr5:112901000-112911000	Strong transcription	Fetal Lung	lung
35	chr5:112901000-112911800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr5:112901200-112909000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr5:112901400-112910800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr5:112901400-112911600	Strong transcription	Adipose Nuclei	Adipose
39	chr5:112901800-112911400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr5:112902000-112910000	Weak transcription	Osteobl	bone
41	chr5:112902200-112911600	Strong transcription	Primary B cells from cord blood	blood
42	chr5:112902800-112910800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr5:112903000-112910000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr5:112903000-112917000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr5:112903600-112909800	Weak transcription	HMEC	breast
46	chr5:112903600-112909800	Weak transcription	NH-A	brain
47	chr5:112903600-112910000	Weak transcription	K562	blood
48	chr5:112903600-112910000	Weak transcription	NHDF-Ad	bronchial
49	chr5:112903800-112909800	Weak transcription	NHLF	lung
50	chr5:112904000-112909600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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