Variant report

Variant	rs1196053
Chromosome Location	chr2:182994035-182994036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1153743	1.00[YRI][hapmap]
rs1196168	1.00[YRI][hapmap]
rs1196186	1.00[YRI][hapmap]
rs1196292	1.00[YRI][hapmap]
rs167284	1.00[YRI][hapmap]
rs2623424	1.00[YRI][hapmap]
rs300881	1.00[AFR][1000 genomes]
rs300882	1.00[YRI][hapmap]
rs300883	1.00[YRI][hapmap]
rs300887	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs833121	1.00[YRI][hapmap]
rs922731	1.00[YRI][hapmap]
rs922732	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182966800-182996400	Weak transcription	Fetal Thymus	thymus
2	chr2:182993200-182995200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:182993200-182995600	Enhancers	Hela-S3	cervix
4	chr2:182993400-182994400	Weak transcription	Fetal Kidney	kidney
5	chr2:182993800-182994200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:182993800-182996400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:182994000-182994400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:182994000-182994600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:182994000-182994600	Enhancers	Osteobl	bone
10	chr2:182994000-182996400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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