Variant report

Variant	rs1196168
Chromosome Location	chr2:182932589-182932590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182920138..182923080-chr2:182928492..182933941,4	MCF-7	breast:
2	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
3	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
4	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
5	chr2:182755436..182758763-chr2:182932137..182938145,9	MCF-7	breast:
6	chr2:182759806..182765656-chr2:182931890..182935341,6	MCF-7	breast:
7	chr2:182770558..182778362-chr2:182931728..182936504,7	MCF-7	breast:
8	chr2:182781794..182783330-chr2:182931429..182933676,2	MCF-7	breast:
9	chr2:182925951..182930145-chr2:182930347..182935935,6	MCF-7	breast:
10	chr2:182882960..182887260-chr2:182931387..182935614,8	MCF-7	breast:
11	chr2:182923273..182925429-chr2:182929671..182932801,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260742	Chromatin interaction
ENSG00000138434	Chromatin interaction
ENSG00000150722	Chromatin interaction

rs_ID	r²[population]
rs1153743	1.00[YRI][hapmap]
rs1196053	1.00[YRI][hapmap]
rs1196186	1.00[YRI][hapmap]
rs1196292	1.00[YRI][hapmap]
rs2623424	1.00[YRI][hapmap]
rs300887	1.00[YRI][hapmap]
rs922731	1.00[YRI][hapmap]
rs922732	1.00[YRI][hapmap]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
2	chr2:182929400-182933000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:182929400-182942600	Weak transcription	Left Ventricle	heart
4	chr2:182929600-182942200	Weak transcription	Fetal Heart	heart
5	chr2:182930200-182932800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:182930200-182935200	Enhancers	Hela-S3	cervix
7	chr2:182930600-182934800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:182930800-182932800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:182930800-182934000	Enhancers	Osteobl	bone
10	chr2:182930800-182934200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:182930800-182934200	Enhancers	HUVEC	blood vessel
12	chr2:182931000-182932600	Enhancers	NHEK	skin
13	chr2:182931000-182933600	Enhancers	NHDF-Ad	bronchial
14	chr2:182931000-182933800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:182931000-182934000	Enhancers	Fetal Lung	lung
16	chr2:182931200-182934800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:182931200-182934800	Enhancers	NHLF	lung
18	chr2:182931400-182933200	Strong transcription	Fetal Thymus	thymus
19	chr2:182932200-182932600	Enhancers	Duodenum Mucosa	Duodenum
20	chr2:182932200-182933000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:182932200-182933000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr2:182932200-182933000	Flanking Active TSS	Liver	Liver
23	chr2:182932200-182933200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr2:182932400-182933600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:182932400-182933600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:182932400-182933800	Weak transcription	NH-A	brain

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