Variant report

Variant	rs11960956
Chromosome Location	chr6:139818400-139818401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139808542..139810707-chr6:139817260..139819598,2	MCF-7	breast:
2	chr6:139817301..139819044-chr6:139820730..139822475,2	K562	blood:
3	chr6:139818335..139820226-chr6:139826249..139828991,2	K562	blood:
4	chr6:139732315..139735138-chr6:139816703..139819497,2	K562	blood:
5	chr6:139692857..139697626-chr6:139818294..139823547,7	K562	blood:
6	chr6:139818335..139820226-chr6:139825228..139828991,3	K562	blood:
7	chr6:139812402..139815311-chr6:139816711..139818432,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12333148	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2908511	0.86[AFR][1000 genomes]
rs6922348	1.00[EUR][1000 genomes]
rs7770826	1.00[EUR][1000 genomes]
rs9495501	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1026819	chr6:139813809-139834012	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139815800-139822800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:139817600-139818400	Enhancers	HepG2	liver
3	chr6:139817600-139820200	Enhancers	Pancreas	Pancrea
4	chr6:139818000-139819000	Flanking Active TSS	K562	blood
5	chr6:139818200-139818600	Enhancers	Fetal Intestine Large	intestine
6	chr6:139818200-139820000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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