Variant report

Variant	rs6922348
Chromosome Location	chr6:139854643-139854644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139853847..139856733-chr6:139867893..139870174,2	K562	blood:
2	chr6:139692148..139698139-chr6:139851839..139857378,9	K562	blood:
3	chr6:139852541..139858362-chr6:139858459..139866113,9	K562	blood:
4	chr6:139695012..139697776-chr6:139853732..139856061,3	MCF-7	breast:
5	chr6:139854472..139857395-chr6:139863139..139865994,2	K562	blood:
6	chr6:139694265..139696326-chr6:139851859..139855562,3	K562	blood:
7	chr6:139842023..139844325-chr6:139853923..139855853,2	K562	blood:
8	chr6:139693457..139697562-chr6:139850894..139856555,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11960956	1.00[EUR][1000 genomes]
rs7770826	1.00[EUR][1000 genomes]
rs9484283	0.93[YRI][hapmap]
rs9495501	1.00[EUR][1000 genomes]
rs9495515	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139840800-139855200	Weak transcription	Pancreas	Pancrea
3	chr6:139842600-139854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:139842600-139861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:139850800-139855000	Weak transcription	Aorta	Aorta
6	chr6:139852200-139855200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:139852400-139854800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:139852600-139855200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:139852600-139855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:139852600-139855200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:139852600-139855200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:139853000-139854800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:139853000-139857800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:139853200-139854800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:139853200-139855200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:139853600-139854800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:139853800-139856000	Enhancers	Ovary	ovary
18	chr6:139854000-139855000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:139854000-139858200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:139854200-139855200	Enhancers	Fetal Intestine Small	intestine
21	chr6:139854200-139856200	Enhancers	Small Intestine	intestine
22	chr6:139854200-139856400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:139854400-139854800	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:139854400-139854800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:139854400-139854800	Enhancers	NHEK	skin
26	chr6:139854400-139855000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:139854400-139855000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:139854400-139855000	Enhancers	Adipose Nuclei	Adipose
29	chr6:139854400-139855000	Enhancers	Hela-S3	cervix
30	chr6:139854400-139855000	Enhancers	NHDF-Ad	bronchial
31	chr6:139854400-139855000	Enhancers	NHLF	lung
32	chr6:139854400-139855200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:139854400-139855200	Enhancers	Rectal Smooth Muscle	rectum
34	chr6:139854400-139855200	Enhancers	HSMM	muscle
35	chr6:139854400-139855400	Enhancers	Stomach Mucosa	stomach
36	chr6:139854400-139855600	Enhancers	Liver	Liver
37	chr6:139854400-139855800	Enhancers	Placenta	Placenta
38	chr6:139854400-139856000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:139854400-139856000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:139854400-139856200	Enhancers	Fetal Kidney	kidney
41	chr6:139854400-139856200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr6:139854400-139856200	Enhancers	HepG2	liver
43	chr6:139854400-139856200	Enhancers	HSMMtube	muscle
44	chr6:139854400-139856200	Enhancers	HUVEC	blood vessel
45	chr6:139854400-139856200	Flanking Active TSS	K562	blood
46	chr6:139854400-139857400	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:139854400-139857600	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:139854400-139857800	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr6:139854600-139854800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:139854600-139854800	Enhancers	Rectal Mucosa Donor 29	rectum

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