Variant report

Variant	rs9495515
Chromosome Location	chr6:139865640-139865641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139861464..139864782-chr6:139865503..139869478,4	MCF-7	breast:
2	chr6:139692536..139698218-chr6:139863826..139868175,6	K562	blood:
3	chr6:139854472..139857395-chr6:139863139..139865994,2	K562	blood:
4	chr6:139691015..139698508-chr6:139861148..139873542,28	MCF-7	breast:
5	chr6:139694324..139695884-chr6:139864465..139866109,2	K562	blood:
6	chr6:139794471..139796039-chr6:139865082..139867209,2	K562	blood:
7	chr6:139852541..139858362-chr6:139858459..139866113,9	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6922348	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139855600-139867400	Weak transcription	Aorta	Aorta
2	chr6:139855600-139871600	Weak transcription	Psoas Muscle	Psoas
3	chr6:139855800-139865800	Weak transcription	Spleen	Spleen
4	chr6:139855800-139866200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:139857800-139867000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:139859200-139867800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:139859400-139866200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:139859800-139876600	Weak transcription	Pancreas	Pancrea
9	chr6:139860400-139865800	Weak transcription	Fetal Kidney	kidney
10	chr6:139861600-139865800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:139861600-139866000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:139861600-139866200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:139861600-139866400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:139861600-139870400	Weak transcription	Esophagus	oesophagus
15	chr6:139861600-139870600	Weak transcription	Fetal Heart	heart
16	chr6:139861800-139865800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:139861800-139865800	Weak transcription	Adipose Nuclei	Adipose
18	chr6:139861800-139866000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:139861800-139868200	Weak transcription	NH-A	brain
20	chr6:139862000-139866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:139862000-139866200	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:139862000-139866600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:139862200-139865800	Weak transcription	Stomach Mucosa	stomach
24	chr6:139862200-139866000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:139862200-139866000	Weak transcription	Small Intestine	intestine
26	chr6:139862200-139867600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr6:139862400-139865800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:139862400-139865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:139862400-139865800	Weak transcription	HSMMtube	muscle
30	chr6:139862400-139865800	Weak transcription	Osteobl	bone
31	chr6:139862400-139866000	Weak transcription	NHLF	lung
32	chr6:139862400-139866200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:139862400-139866200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:139862400-139866200	Weak transcription	NHDF-Ad	bronchial
35	chr6:139862400-139866400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:139862400-139867800	Weak transcription	HSMM	muscle
37	chr6:139862600-139865800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:139862600-139866200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:139862600-139867400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:139863200-139876200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:139863600-139866200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:139863800-139866000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:139863800-139866200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:139863800-139866400	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:139863800-139866600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:139863800-139867800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:139864800-139865800	Enhancers	K562	blood
48	chr6:139865000-139866000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:139865000-139866400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:139865200-139866200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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