Variant report

Variant	rs9484283
Chromosome Location	chr6:139849456-139849457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139847391..139850061-chr6:139850076..139853119,3	K562	blood:
2	chr6:139840112..139841648-chr6:139848292..139851114,2	K562	blood:
3	chr6:139692040..139694270-chr6:139848513..139850219,2	MCF-7	breast:
4	chr6:139847582..139849862-chr6:139861766..139864417,2	K562	blood:
5	chr6:139841605..139843339-chr6:139847235..139850097,2	MCF-7	breast:
6	chr6:139693133..139695211-chr6:139848711..139851339,2	K562	blood:
7	chr6:139840112..139843143-chr6:139848292..139853200,4	K562	blood:
8	chr6:139848238..139850178-chr6:139850212..139853403,3	MCF-7	breast:
9	chr6:139694203..139697051-chr6:139847422..139849973,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6922348	0.93[YRI][hapmap]
rs7770826	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139840800-139855200	Weak transcription	Pancreas	Pancrea
3	chr6:139841000-139854600	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:139841600-139853000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:139842600-139854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:139842600-139861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:139844400-139851800	Weak transcription	Fetal Lung	lung
8	chr6:139846800-139852000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:139847000-139851400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:139847000-139851800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:139847000-139851800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:139847000-139852000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:139847000-139852200	Weak transcription	NHDF-Ad	bronchial
14	chr6:139847200-139851800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:139849000-139849600	Enhancers	K562	blood
16	chr6:139849200-139850000	Enhancers	HUVEC	blood vessel
17	chr6:139849200-139850400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:139849400-139849600	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:139849400-139850000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:139849400-139850200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:139849400-139851200	Enhancers	Primary monocytes fromperipheralblood	blood

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