Variant report

Variant	rs1196150
Chromosome Location	chr2:182953366-182953367
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10497594	0.90[ASN][1000 genomes]
rs1196156	0.90[GIH][hapmap]
rs1196158	0.81[GIH][hapmap]
rs1196162	0.90[GIH][hapmap]
rs12469776	0.90[ASN][1000 genomes]
rs1432526	0.91[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs16822617	0.86[ASN][1000 genomes]
rs16822707	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3731688	0.90[ASN][1000 genomes]
rs4666575	0.90[ASN][1000 genomes]
rs4666808	0.93[ASN][1000 genomes]
rs4666810	0.90[ASN][1000 genomes]
rs4666811	0.90[ASN][1000 genomes]
rs61278903	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182950600-182954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:182952400-182953800	Enhancers	Fetal Stomach	stomach
3	chr2:182952400-182954400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:182952800-182953600	Weak transcription	Fetal Kidney	kidney
5	chr2:182952800-182955200	Enhancers	Fetal Lung	lung
6	chr2:182952800-182955200	Enhancers	HSMMtube	muscle
7	chr2:182953200-182953400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:182953200-182953400	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr2:182953200-182954000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr2:182953200-182954000	Enhancers	NHLF	lung
11	chr2:182953200-182954200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:182953200-182954200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr2:182953200-182954200	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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