Variant report

Variant	rs1432526
Chromosome Location	chr2:182996581-182996582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10497594	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1196150	0.91[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs1196156	0.90[GIH][hapmap]
rs1196158	0.81[GIH][hapmap]
rs1196162	0.90[GIH][hapmap]
rs12469776	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12473917	1.00[EUR][1000 genomes]
rs16822617	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16822707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3731688	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3769786	1.00[EUR][1000 genomes]
rs4666575	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4666808	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4666809	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4666810	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4666811	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61278903	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875478	chr2:182960289-182998122	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182994400-182996800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:182994600-182996600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:182995200-182996600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:182995400-182996600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:182995600-182996800	Weak transcription	Hela-S3	cervix
6	chr2:182995600-182997800	Weak transcription	HMEC	breast
7	chr2:182995800-182996800	Weak transcription	Fetal Kidney	kidney
8	chr2:182996200-182996800	Enhancers	HUVEC	blood vessel
9	chr2:182996200-182997000	Enhancers	Right Atrium	heart
10	chr2:182996400-182996800	Enhancers	Osteobl	bone
11	chr2:182996400-182997000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:182996400-182997000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:182996400-182997200	Enhancers	Aorta	Aorta
14	chr2:182996400-182999800	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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