Variant report

Variant	rs12473917
Chromosome Location	chr2:182950650-182950651
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10497594	0.89[AMR][1000 genomes]
rs1196156	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1196158	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1196162	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1196163	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12469776	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1432526	1.00[EUR][1000 genomes]
rs16822617	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16822707	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921142	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2674604	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3108787	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3108788	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3731688	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3769786	1.00[EUR][1000 genomes]
rs4666575	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4666808	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4666809	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4666810	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4666811	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61278903	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182950400-182953200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:182950600-182954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links