Variant report

Variant	rs1196163
Chromosome Location	chr2:182930938-182930939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:182920138..182923080-chr2:182928492..182933941,4	MCF-7	breast:
2	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
3	chr2:182925951..182930145-chr2:182930347..182935935,6	MCF-7	breast:
4	chr2:182885316..182887646-chr2:182929633..182931322,2	MCF-7	breast:
5	chr2:182923273..182925429-chr2:182929671..182932801,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150722	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10497589	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1153739	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1196139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1196162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470212	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12473917	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12478631	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1400006	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822363	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16822364	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16822366	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921143	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921144	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921146	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2204831	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2204832	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2249726	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263008	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2674596	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2674600	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2674601	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2674604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701667	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701668	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2701669	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2701670	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106775	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108789	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
2	chr2:182928600-182931600	Weak transcription	Liver	Liver
3	chr2:182929400-182931800	Weak transcription	Fetal Intestine Small	intestine
4	chr2:182929400-182933000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:182929400-182942600	Weak transcription	Left Ventricle	heart
6	chr2:182929600-182931000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:182929600-182931200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:182929600-182942200	Weak transcription	Fetal Heart	heart
9	chr2:182929800-182931000	Weak transcription	NHDF-Ad	bronchial
10	chr2:182929800-182931200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:182930200-182932800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:182930200-182935200	Enhancers	Hela-S3	cervix
13	chr2:182930400-182931200	Weak transcription	NHLF	lung
14	chr2:182930400-182931800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:182930600-182931000	Weak transcription	Fetal Lung	lung
16	chr2:182930600-182931400	Weak transcription	Fetal Thymus	thymus
17	chr2:182930600-182934800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:182930800-182932400	Enhancers	NH-A	brain
19	chr2:182930800-182932800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:182930800-182934000	Enhancers	Osteobl	bone
21	chr2:182930800-182934200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:182930800-182934200	Enhancers	HUVEC	blood vessel

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