Variant report

Variant	rs2674596
Chromosome Location	chr2:182875941-182875942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10497589	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1153731	0.82[YRI][hapmap]
rs1153739	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1196139	0.97[ASN][1000 genomes]
rs1196156	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1196158	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1196162	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1196163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12470212	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12473917	1.00[JPT][hapmap]
rs12478631	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400006	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16822363	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16822364	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16822366	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1921142	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1921143	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1921144	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1921146	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2204831	0.90[ASN][1000 genomes]
rs2204832	0.90[ASN][1000 genomes]
rs2249726	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2263008	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2674600	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2674601	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2674604	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2701667	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2701668	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2701669	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2701670	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3106774	0.97[ASN][1000 genomes]
rs3106775	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3108787	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3108788	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3108789	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv834479	chr2:182738483-182905444	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182843400-182904000	Weak transcription	Thymus	Thymus
2	chr2:182845400-182879000	Weak transcription	Fetal Thymus	thymus

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