Variant report

Variant	rs11962053
Chromosome Location	chr6:118457253-118457254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118453596..118455211-chr6:118457163..118459104,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10484290	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499085	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11153724	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11754233	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11754931	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11755798	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759870	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11962518	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11965805	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12110370	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1334831	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1334832	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1334833	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1334834	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1334836	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1334838	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17334660	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17822466	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2883773	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3923321	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3923322	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4028067	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4479972	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6940758	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72961889	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775284	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs977793	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118454000-118457400	Enhancers	Fetal Stomach	stomach
2	chr6:118454000-118460200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:118457200-118466200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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