Variant report

Variant	rs7775284
Chromosome Location	chr6:118423561-118423562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118423532..118426658-chr6:118429132..118430973,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484290	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10499085	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11153722	1.00[CEU][hapmap]
rs11153724	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11754233	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11754931	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755798	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11759870	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11962053	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11962518	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11963467	1.00[CEU][hapmap]
rs11965805	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11969878	0.83[ASN][1000 genomes]
rs12110370	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1334831	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334832	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334833	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334834	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334836	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334838	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1334839	1.00[CEU][hapmap]
rs1334840	1.00[CEU][hapmap]
rs17334660	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17822466	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2883773	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3923321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3923322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4028067	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4416699	0.80[CHB][hapmap]
rs4479972	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4512262	1.00[CEU][hapmap]
rs4593395	1.00[CEU][hapmap]
rs4946322	0.80[CHB][hapmap]
rs6940758	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72961809	0.83[ASN][1000 genomes]
rs72961889	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs756290	1.00[CEU][hapmap]
rs7743666	1.00[CEU][hapmap]
rs7743889	0.96[CEU][hapmap]
rs7743917	1.00[CEU][hapmap]
rs9374715	0.80[CHB][hapmap]
rs9385035	0.80[CHB][hapmap]
rs977793	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118421800-118424000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:118422000-118424800	Enhancers	Brain Anterior Caudate	brain
3	chr6:118422000-118425600	Enhancers	Fetal Brain Male	brain
4	chr6:118422000-118426000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:118422200-118424400	Enhancers	Fetal Brain Female	brain
6	chr6:118422400-118424000	Enhancers	Fetal Stomach	stomach
7	chr6:118422600-118423800	Weak transcription	Right Ventricle	heart
8	chr6:118422600-118427800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:118422800-118423600	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:118422800-118424200	Enhancers	Fetal Lung	lung
11	chr6:118422800-118424600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:118423000-118423800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:118423200-118424000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:118423200-118424800	Enhancers	Left Ventricle	heart
15	chr6:118423400-118424600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:118423400-118424800	Enhancers	Brain Cingulate Gyrus	brain
17	chr6:118423400-118425000	Enhancers	Brain Germinal Matrix	brain
18	chr6:118423400-118425400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:118423400-118425400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:118423400-118428000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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