Variant report

Variant	rs11969878
Chromosome Location	chr6:118413832-118413833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11153720	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11758838	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11962518	0.89[ASN][1000 genomes]
rs3923321	0.89[ASN][1000 genomes]
rs3923322	0.89[ASN][1000 genomes]
rs4416699	0.91[EUR][1000 genomes]
rs4945610	0.91[EUR][1000 genomes]
rs4945611	0.91[EUR][1000 genomes]
rs4946322	0.91[EUR][1000 genomes]
rs4946323	0.91[EUR][1000 genomes]
rs5017623	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56281443	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6568999	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72961809	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73514517	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7775284	0.83[ASN][1000 genomes]
rs9374715	0.91[EUR][1000 genomes]
rs9385035	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118409600-118414600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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