Variant report

Variant	rs11962332
Chromosome Location	chr6:128645636-128645637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10485162	1.00[AMR][1000 genomes]
rs11961948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055461	1.00[AMR][1000 genomes]
rs1856497	1.00[AMR][1000 genomes]
rs4895832	1.00[AMR][1000 genomes]
rs6904846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6905735	1.00[AMR][1000 genomes]
rs6931593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746423	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128609000-128646000	Weak transcription	NH-A	brain
2	chr6:128621800-128649000	Weak transcription	HSMMtube	muscle
3	chr6:128626200-128645800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:128627800-128649000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:128631600-128648600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:128631800-128649000	Weak transcription	Aorta	Aorta
7	chr6:128632000-128649000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:128632000-128650600	Weak transcription	Psoas Muscle	Psoas
9	chr6:128632000-128650800	Weak transcription	Right Ventricle	heart
10	chr6:128632000-128658000	Weak transcription	Ovary	ovary
11	chr6:128632200-128665200	Weak transcription	Gastric	stomach
12	chr6:128633600-128649000	Weak transcription	Fetal Thymus	thymus
13	chr6:128635600-128672000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:128635800-128654200	Weak transcription	Liver	Liver
15	chr6:128639000-128660600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:128639000-128660800	Weak transcription	Small Intestine	intestine
17	chr6:128639400-128648800	Weak transcription	HUVEC	blood vessel
18	chr6:128639800-128659000	Weak transcription	Fetal Stomach	stomach
19	chr6:128640000-128653200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:128640000-128660600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:128640600-128649000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:128640600-128649000	Weak transcription	Primary T cells from cord blood	blood
23	chr6:128641400-128649000	Weak transcription	Fetal Lung	lung
24	chr6:128641400-128661400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:128641800-128657600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:128642000-128649000	Weak transcription	Left Ventricle	heart
27	chr6:128642000-128657000	Weak transcription	HepG2	liver
28	chr6:128643400-128648600	Weak transcription	Fetal Intestine Large	intestine
29	chr6:128643400-128649000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:128643400-128649000	Weak transcription	HSMM	muscle
31	chr6:128643400-128659000	Weak transcription	NHEK	skin
32	chr6:128643400-128660600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:128643600-128653400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:128643800-128648800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:128644600-128646000	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr6:128644800-128646000	Weak transcription	Brain Anterior Caudate	brain
37	chr6:128645000-128654800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:128645200-128645800	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:128645600-128646000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links