Variant report

Variant	rs4895832
Chromosome Location	chr6:128598059-128598060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10046162	0.82[EUR][1000 genomes]
rs10485161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499138	1.00[EUR][1000 genomes]
rs11961948	1.00[AMR][1000 genomes]
rs11962332	1.00[AMR][1000 genomes]
rs11962916	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11968433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970637	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17053270	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055290	1.00[EUR][1000 genomes]
rs17055300	1.00[EUR][1000 genomes]
rs17055360	1.00[EUR][1000 genomes]
rs17055365	1.00[EUR][1000 genomes]
rs17055403	1.00[EUR][1000 genomes]
rs17055412	1.00[EUR][1000 genomes]
rs17055415	1.00[EUR][1000 genomes]
rs17055421	1.00[EUR][1000 genomes]
rs17055443	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17055445	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17055461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1768358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856497	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28874136	0.82[EUR][1000 genomes]
rs4131020	1.00[EUR][1000 genomes]
rs4496822	0.82[EUR][1000 genomes]
rs4897244	1.00[EUR][1000 genomes]
rs4897245	1.00[EUR][1000 genomes]
rs4897246	1.00[EUR][1000 genomes]
rs4897247	1.00[EUR][1000 genomes]
rs4897248	1.00[EUR][1000 genomes]
rs4897249	1.00[EUR][1000 genomes]
rs4897250	1.00[EUR][1000 genomes]
rs55828045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56042959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56932458	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57797601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58652879	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58706847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59341107	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60264538	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60436012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61111040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61757810	1.00[AMR][1000 genomes]
rs6900798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904846	1.00[AMR][1000 genomes]
rs6905735	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909380	1.00[EUR][1000 genomes]
rs6910587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913738	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6918772	1.00[EUR][1000 genomes]
rs6929394	1.00[EUR][1000 genomes]
rs6929623	1.00[EUR][1000 genomes]
rs6931593	1.00[AMR][1000 genomes]
rs6933133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938199	1.00[EUR][1000 genomes]
rs73588698	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73590666	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73592613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73592686	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746423	1.00[AMR][1000 genomes]
rs7751187	1.00[EUR][1000 genomes]
rs7752113	0.82[EUR][1000 genomes]
rs7754637	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768121	1.00[EUR][1000 genomes]
rs7772200	1.00[EUR][1000 genomes]
rs9491909	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128585200-128617600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:128585400-128598200	Weak transcription	HepG2	liver
3	chr6:128586400-128602000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:128587600-128602200	Weak transcription	Fetal Intestine Large	intestine
5	chr6:128588000-128608200	Weak transcription	Aorta	Aorta
6	chr6:128592600-128599200	Weak transcription	Fetal Brain Male	brain
7	chr6:128592800-128598200	Weak transcription	Fetal Stomach	stomach
8	chr6:128592800-128598400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:128592800-128602200	Weak transcription	Psoas Muscle	Psoas
10	chr6:128592800-128605200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:128593000-128600000	Weak transcription	Fetal Heart	heart
12	chr6:128593000-128600000	Weak transcription	Ovary	ovary
13	chr6:128593000-128603200	Weak transcription	Stomach Mucosa	stomach
14	chr6:128593000-128609000	Weak transcription	Fetal Lung	lung
15	chr6:128593000-128631600	Weak transcription	Left Ventricle	heart
16	chr6:128593200-128600000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:128594200-128601000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:128595800-128598200	Enhancers	HUVEC	blood vessel
19	chr6:128595800-128598400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:128595800-128608800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:128596000-128598800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:128596200-128598200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:128596200-128598400	Enhancers	NHDF-Ad	bronchial
24	chr6:128596200-128599000	Enhancers	Osteobl	bone
25	chr6:128596600-128608800	Weak transcription	NH-A	brain
26	chr6:128596800-128602800	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:128596800-128607400	Weak transcription	HSMMtube	muscle
28	chr6:128596800-128623600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:128597000-128598200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:128597400-128598800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:128597600-128598200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:128597600-128598800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:128597600-128598800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:128597800-128598400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:128597800-128598600	Weak transcription	Brain Substantia Nigra	brain
36	chr6:128597800-128598800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:128597800-128599200	Enhancers	Liver	Liver
38	chr6:128597800-128625000	Weak transcription	HSMM	muscle

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