Variant report

Variant	rs17055421
Chromosome Location	chr6:128506647-128506648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10046162	0.82[EUR][1000 genomes]
rs10485161	1.00[EUR][1000 genomes]
rs10485162	1.00[CHD][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs10499136	0.82[EUR][1000 genomes]
rs10499137	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10499138	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11961776	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11962214	1.00[JPT][hapmap]
rs11962916	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11965115	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11967302	0.82[ASN][1000 genomes]
rs11968433	1.00[CHD][hapmap];1.00[EUR][1000 genomes]
rs11970637	1.00[EUR][1000 genomes]
rs12110357	1.00[JPT][hapmap]
rs12110728	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17053270	1.00[EUR][1000 genomes]
rs17055270	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17055274	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17055283	0.91[ASN][1000 genomes]
rs17055285	0.91[ASN][1000 genomes]
rs17055290	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055300	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055365	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055391	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17055403	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055412	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.80[MKK][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17055415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055443	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17055445	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17055461	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17055488	1.00[EUR][1000 genomes]
rs17055499	1.00[EUR][1000 genomes]
rs17055501	1.00[EUR][1000 genomes]
rs17055507	1.00[EUR][1000 genomes]
rs1738273	1.00[EUR][1000 genomes]
rs1768358	1.00[EUR][1000 genomes]
rs1856497	1.00[EUR][1000 genomes]
rs28874136	0.82[EUR][1000 genomes]
rs3923033	0.82[ASN][1000 genomes]
rs4072328	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4131020	1.00[EUR][1000 genomes]
rs41439546	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4440487	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4496822	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4498385	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4895830	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4895832	1.00[EUR][1000 genomes]
rs4897244	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897245	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897246	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897247	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897248	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897249	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897250	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55828045	1.00[EUR][1000 genomes]
rs56042959	1.00[EUR][1000 genomes]
rs56932458	1.00[EUR][1000 genomes]
rs57797601	1.00[EUR][1000 genomes]
rs58652879	1.00[EUR][1000 genomes]
rs58706847	1.00[EUR][1000 genomes]
rs59341107	0.90[EUR][1000 genomes]
rs59636446	0.91[ASN][1000 genomes]
rs60264538	1.00[EUR][1000 genomes]
rs60436012	1.00[EUR][1000 genomes]
rs61111040	1.00[EUR][1000 genomes]
rs6900798	0.85[CHD][hapmap];1.00[EUR][1000 genomes]
rs6904354	0.82[ASN][1000 genomes]
rs6905735	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs6909380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910587	1.00[EUR][1000 genomes]
rs6913738	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6918772	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929623	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933133	1.00[EUR][1000 genomes]
rs6935188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6938199	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73584655	0.83[ASN][1000 genomes]
rs73584673	0.91[ASN][1000 genomes]
rs73586607	0.82[ASN][1000 genomes]
rs73586609	0.82[ASN][1000 genomes]
rs73586611	0.82[ASN][1000 genomes]
rs73586613	0.82[ASN][1000 genomes]
rs73588647	0.82[ASN][1000 genomes]
rs73588698	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73590666	1.00[EUR][1000 genomes]
rs73592613	1.00[EUR][1000 genomes]
rs73592686	1.00[EUR][1000 genomes]
rs73773990	0.82[EUR][1000 genomes]
rs7746423	1.00[YRI][hapmap]
rs7746783	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7751187	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752113	0.82[EUR][1000 genomes]
rs7754321	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7754637	1.00[EUR][1000 genomes]
rs7759202	1.00[YRI][hapmap]
rs7768121	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769070	1.00[JPT][hapmap]
rs7772200	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9491909	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886651	chr6:128450019-128565778	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886653	chr6:128455539-128555805	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv886654	chr6:128471938-128555805	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128465600-128523200	Weak transcription	Left Ventricle	heart
2	chr6:128488200-128508000	Weak transcription	Aorta	Aorta
3	chr6:128488200-128565200	Weak transcription	Fetal Stomach	stomach
4	chr6:128489000-128507800	Weak transcription	NHLF	lung
5	chr6:128489800-128514200	Weak transcription	Gastric	stomach
6	chr6:128490000-128511600	Weak transcription	Pancreas	Pancrea
7	chr6:128490000-128520200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:128492600-128567800	Weak transcription	Ovary	ovary
9	chr6:128494400-128526000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:128495000-128523400	Weak transcription	HSMMtube	muscle
11	chr6:128498000-128507200	Weak transcription	Thymus	Thymus
12	chr6:128498600-128508000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:128499800-128513800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:128501400-128508400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:128501600-128510000	Weak transcription	Brain Substantia Nigra	brain
16	chr6:128501800-128513000	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:128502200-128507000	Weak transcription	Placenta	Placenta
18	chr6:128502200-128507400	Weak transcription	HUVEC	blood vessel
19	chr6:128502400-128507600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:128502800-128507400	Weak transcription	Lung	lung
21	chr6:128503200-128507400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:128503200-128541800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:128503800-128507800	Weak transcription	Fetal Kidney	kidney
24	chr6:128504400-128507000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:128505400-128507000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:128505400-128514000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:128505600-128508800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:128505600-128510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:128505800-128507400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:128505800-128507400	Weak transcription	Adipose Nuclei	Adipose
31	chr6:128505800-128507600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:128505800-128507600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:128505800-128507600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:128505800-128507800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:128505800-128507800	Weak transcription	Osteobl	bone
36	chr6:128505800-128508800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:128505800-128508800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:128505800-128509200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:128505800-128509200	Weak transcription	Fetal Intestine Large	intestine
40	chr6:128505800-128509400	Weak transcription	Liver	Liver
41	chr6:128505800-128509800	Weak transcription	Primary B cells from cord blood	blood
42	chr6:128505800-128510400	Weak transcription	NH-A	brain
43	chr6:128505800-128514200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:128505800-128515800	Weak transcription	HMEC	breast
45	chr6:128505800-128523200	Weak transcription	Fetal Thymus	thymus
46	chr6:128505800-128525600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:128505800-128525600	Weak transcription	NHEK	skin
48	chr6:128505800-128538800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:128505800-128552200	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:128506000-128507800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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