Variant report

Variant	rs6904354
Chromosome Location	chr6:128438066-128438067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10499137	0.92[EUR][1000 genomes]
rs10499138	0.82[ASN][1000 genomes]
rs10872329	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962214	0.89[ASN][1000 genomes]
rs11965115	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110357	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12110728	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055270	0.92[EUR][1000 genomes]
rs17055274	0.92[EUR][1000 genomes]
rs17055283	0.92[EUR][1000 genomes]
rs17055285	0.92[EUR][1000 genomes]
rs17055300	0.82[ASN][1000 genomes]
rs17055360	0.82[ASN][1000 genomes]
rs17055365	0.82[ASN][1000 genomes]
rs17055391	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055403	0.82[ASN][1000 genomes]
rs17055415	0.82[ASN][1000 genomes]
rs17055421	0.82[ASN][1000 genomes]
rs3923033	1.00[ASN][1000 genomes]
rs4072328	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41439546	0.92[EUR][1000 genomes]
rs4364497	0.82[EUR][1000 genomes]
rs4440487	1.00[ASN][1000 genomes]
rs4498385	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4895830	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897244	0.82[ASN][1000 genomes]
rs4897245	0.82[ASN][1000 genomes]
rs4897246	0.82[ASN][1000 genomes]
rs4897247	0.82[ASN][1000 genomes]
rs4897248	0.82[ASN][1000 genomes]
rs4897249	0.82[ASN][1000 genomes]
rs4897250	0.82[ASN][1000 genomes]
rs59636446	0.92[EUR][1000 genomes]
rs6909380	0.82[ASN][1000 genomes]
rs6909954	0.80[EUR][1000 genomes]
rs6918772	0.82[ASN][1000 genomes]
rs6929394	0.82[ASN][1000 genomes]
rs6929623	0.82[ASN][1000 genomes]
rs6935188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938199	0.82[ASN][1000 genomes]
rs7356979	0.82[EUR][1000 genomes]
rs73584655	0.92[EUR][1000 genomes]
rs73584673	0.92[EUR][1000 genomes]
rs73586607	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73586609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73586611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73586613	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588647	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590658	0.89[ASN][1000 genomes]
rs7746783	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7754321	1.00[ASN][1000 genomes]
rs7768121	0.82[ASN][1000 genomes]
rs7769070	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7772200	0.82[ASN][1000 genomes]
rs9491913	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604651	chr6:128434273-128441606	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128411600-128445600	Weak transcription	HepG2	liver
2	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:128432200-128448200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:128433800-128441000	Weak transcription	Pancreas	Pancrea
7	chr6:128434200-128439000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:128434200-128439200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:128434200-128439200	Weak transcription	NHLF	lung
10	chr6:128434200-128442800	Weak transcription	Thymus	Thymus
11	chr6:128434200-128444000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:128434400-128439000	Weak transcription	NHDF-Ad	bronchial
13	chr6:128434400-128439200	Weak transcription	HSMM	muscle
14	chr6:128434400-128439200	Weak transcription	Osteobl	bone
15	chr6:128434400-128439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:128434400-128439800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:128434400-128445600	Weak transcription	Fetal Intestine Small	intestine
18	chr6:128434400-128449400	Weak transcription	Brain Angular Gyrus	brain
19	chr6:128434400-128455800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:128434400-128456800	Weak transcription	Fetal Stomach	stomach
21	chr6:128435600-128455600	Weak transcription	Left Ventricle	heart
22	chr6:128435800-128440800	Weak transcription	Liver	Liver
23	chr6:128436400-128439200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:128436400-128439200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:128437800-128450800	Weak transcription	Fetal Heart	heart

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