Variant report

Variant	rs17055283
Chromosome Location	chr6:128422583-128422584
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10499137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499138	0.91[ASN][1000 genomes]
rs10872329	0.92[EUR][1000 genomes]
rs11962916	0.86[ASN][1000 genomes]
rs11965115	0.92[EUR][1000 genomes]
rs11967302	0.92[EUR][1000 genomes]
rs12110357	0.92[EUR][1000 genomes]
rs12110728	0.92[EUR][1000 genomes]
rs17055270	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17055274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17055281	1.00[AMR][1000 genomes]
rs17055285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055287	1.00[AMR][1000 genomes]
rs17055290	0.95[ASN][1000 genomes]
rs17055300	0.91[ASN][1000 genomes]
rs17055307	1.00[AMR][1000 genomes]
rs17055313	1.00[AMR][1000 genomes]
rs17055318	1.00[AMR][1000 genomes]
rs17055321	1.00[AMR][1000 genomes]
rs17055324	1.00[AMR][1000 genomes]
rs17055328	1.00[AMR][1000 genomes]
rs17055339	1.00[AMR][1000 genomes]
rs17055340	1.00[AMR][1000 genomes]
rs17055343	1.00[AMR][1000 genomes]
rs17055348	1.00[AMR][1000 genomes]
rs17055350	1.00[AMR][1000 genomes]
rs17055352	1.00[AMR][1000 genomes]
rs17055360	0.91[ASN][1000 genomes]
rs17055362	1.00[AMR][1000 genomes]
rs17055365	0.91[ASN][1000 genomes]
rs17055368	1.00[AMR][1000 genomes]
rs17055373	1.00[AMR][1000 genomes]
rs17055386	1.00[AMR][1000 genomes]
rs17055391	0.87[EUR][1000 genomes]
rs17055403	0.91[ASN][1000 genomes]
rs17055412	0.81[ASN][1000 genomes]
rs17055415	0.91[ASN][1000 genomes]
rs17055421	0.91[ASN][1000 genomes]
rs17055443	0.86[ASN][1000 genomes]
rs17055445	0.86[ASN][1000 genomes]
rs17760864	1.00[AMR][1000 genomes]
rs4072328	0.92[EUR][1000 genomes]
rs41439546	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895830	0.92[EUR][1000 genomes]
rs4897244	0.91[ASN][1000 genomes]
rs4897245	0.91[ASN][1000 genomes]
rs4897246	0.91[ASN][1000 genomes]
rs4897247	0.91[ASN][1000 genomes]
rs4897248	0.91[ASN][1000 genomes]
rs4897249	0.91[ASN][1000 genomes]
rs4897250	0.91[ASN][1000 genomes]
rs59636446	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904354	0.92[EUR][1000 genomes]
rs6909380	0.91[ASN][1000 genomes]
rs6913738	0.86[ASN][1000 genomes]
rs6918772	0.91[ASN][1000 genomes]
rs6929394	0.91[ASN][1000 genomes]
rs6929623	0.91[ASN][1000 genomes]
rs6935188	0.92[EUR][1000 genomes]
rs6938199	0.91[ASN][1000 genomes]
rs73584655	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73584673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73586607	0.92[EUR][1000 genomes]
rs73586609	0.92[EUR][1000 genomes]
rs73586611	0.92[EUR][1000 genomes]
rs73586613	0.92[EUR][1000 genomes]
rs73588647	0.87[EUR][1000 genomes]
rs73588698	0.86[ASN][1000 genomes]
rs7746783	0.92[EUR][1000 genomes]
rs7751187	0.95[ASN][1000 genomes]
rs7768121	0.91[ASN][1000 genomes]
rs7769070	0.92[EUR][1000 genomes]
rs7772200	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv516794	chr6:128403745-128430506	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2763955	chr6:128418714-128436415	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv5471	chr6:128419437-128430379	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604645	chr6:128421762-128437136	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
3	chr6:128379000-128432800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:128399000-128422600	Weak transcription	HUVEC	blood vessel
5	chr6:128401400-128431800	Weak transcription	Right Ventricle	heart
6	chr6:128401800-128433600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
8	chr6:128405000-128431400	Weak transcription	Primary B cells from cord blood	blood
9	chr6:128406600-128433000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:128411000-128433600	Weak transcription	HSMMtube	muscle
11	chr6:128411200-128424600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:128411200-128433800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:128411200-128433800	Weak transcription	Fetal Stomach	stomach
14	chr6:128411200-128433800	Weak transcription	Ovary	ovary
15	chr6:128411600-128445600	Weak transcription	HepG2	liver
16	chr6:128419800-128424000	Weak transcription	Pancreas	Pancrea
17	chr6:128419800-128424200	Weak transcription	Left Ventricle	heart
18	chr6:128419800-128424200	Weak transcription	Right Atrium	heart
19	chr6:128419800-128424600	Weak transcription	Gastric	stomach
20	chr6:128419800-128434800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:128421400-128431400	Weak transcription	Brain Substantia Nigra	brain
23	chr6:128422400-128422800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links