Variant report

Variant	rs7746783
Chromosome Location	chr6:128430506-128430507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10485162	1.00[CHD][hapmap]
rs10499137	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs10499138	1.00[JPT][hapmap]
rs10872329	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11961776	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs11962214	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11962916	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11965115	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11967302	0.84[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11968433	1.00[CHD][hapmap]
rs12110357	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110728	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055270	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs17055274	0.82[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs17055283	0.92[EUR][1000 genomes]
rs17055285	0.92[EUR][1000 genomes]
rs17055287	1.00[CEU][hapmap]
rs17055290	0.81[ASN][1000 genomes]
rs17055391	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055412	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs17055421	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17055445	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1738283	0.81[ASN][1000 genomes]
rs1738288	0.81[ASN][1000 genomes]
rs1738290	0.81[ASN][1000 genomes]
rs1768346	0.81[ASN][1000 genomes]
rs1856498	0.81[ASN][1000 genomes]
rs3923033	0.96[ASN][1000 genomes]
rs4072328	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41439546	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs4364497	0.85[CEU][hapmap];1.00[GIH][hapmap];0.82[EUR][1000 genomes]
rs4440487	1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4496822	1.00[JPT][hapmap]
rs4498385	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4895830	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4897244	1.00[JPT][hapmap]
rs4897245	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4897246	1.00[JPT][hapmap]
rs4897247	1.00[JPT][hapmap]
rs4897248	1.00[JPT][hapmap]
rs4897250	1.00[JPT][hapmap]
rs59636446	0.92[EUR][1000 genomes]
rs6900798	0.85[CHD][hapmap]
rs6904354	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6909954	0.80[EUR][1000 genomes]
rs6913738	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6918772	1.00[JPT][hapmap]
rs6929623	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6935188	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6938199	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7356979	0.82[EUR][1000 genomes]
rs73584655	0.92[EUR][1000 genomes]
rs73584673	0.92[EUR][1000 genomes]
rs73586607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73586609	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73586611	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73586613	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73588647	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73590658	0.93[ASN][1000 genomes]
rs7751187	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7754321	0.82[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[ASN][1000 genomes]
rs7768121	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7769070	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772200	1.00[JPT][hapmap]
rs7772941	0.81[ASN][1000 genomes]
rs9375548	1.00[GIH][hapmap]
rs9491913	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv516794	chr6:128403745-128430506	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2763955	chr6:128418714-128436415	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv604645	chr6:128421762-128437136	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
3	chr6:128379000-128432800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:128401400-128431800	Weak transcription	Right Ventricle	heart
5	chr6:128401800-128433600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
7	chr6:128405000-128431400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:128406600-128433000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:128411000-128433600	Weak transcription	HSMMtube	muscle
10	chr6:128411200-128433800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:128411200-128433800	Weak transcription	Fetal Stomach	stomach
12	chr6:128411200-128433800	Weak transcription	Ovary	ovary
13	chr6:128411600-128445600	Weak transcription	HepG2	liver
14	chr6:128419800-128434800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:128421400-128431400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:128422800-128431800	Weak transcription	Liver	Liver
18	chr6:128424800-128432800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr6:128425200-128433600	Weak transcription	Right Atrium	heart
21	chr6:128425200-128435200	Weak transcription	Gastric	stomach
22	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:128430200-128431800	Weak transcription	Fetal Heart	heart

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