Variant report

Variant	rs11962335
Chromosome Location	chr6:35441167-35441168
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35440922..35443535-chr6:35489068..35490645,2	K562	blood:
2	chr6:35419539..35422466-chr6:35438622..35441201,2	MCF-7	breast:
3	chr6:35441082..35443113-chr6:35703607..35706481,2	K562	blood:
4	chr6:35231213..35234012-chr6:35440944..35442482,2	K562	blood:
5	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
6	chr6:35418658..35421546-chr6:35440931..35443702,2	K562	blood:
7	chr6:35439431..35441944-chr6:35514105..35515809,2	MCF-7	breast:
8	chr6:35309030..35311624-chr6:35440652..35443550,3	K562	blood:
9	chr6:34855012..34857706-chr6:35439767..35441734,2	K562	blood:
10	chr20:45317919..45318811-chr6:35441135..35441693,2	Hela-S3	cervix:
11	chr6:35237573..35240091-chr6:35439792..35442859,3	K562	blood:
12	chr1:109234339..109236441-chr6:35439456..35441815,2	MCF-7	breast:
13	chr6:35263451..35267137-chr6:35438747..35441852,5	K562	blood:
14	chr11:62608630..62609133-chr6:35441039..35441893,2	NB4	blood:

No data

Variant related genes	Relation type
ENSG00000271784	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000232909	Chromatin interaction
ENSG00000134186	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000157343	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000064999	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000064995	Chromatin interaction
ENSG00000172315	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1016146	1.00[YRI][hapmap]
rs2076173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800377	1.00[YRI][hapmap]
rs4713859	0.81[JPT][hapmap]
rs760782	1.00[YRI][hapmap]
rs7739148	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757405	0.93[YRI][hapmap]
rs9394298	0.89[AMR][1000 genomes]
rs9394299	0.92[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9462091	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
3	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
6	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35437600-35449200	Strong transcription	Aorta	Aorta
2	chr6:35437800-35443800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:35437800-35446200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:35437800-35451000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:35438000-35441400	Genic enhancers	Placenta	Placenta
6	chr6:35438000-35443200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:35438000-35455800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:35438200-35441200	Strong transcription	Brain Hippocampus Middle	brain
9	chr6:35438200-35441400	Genic enhancers	Left Ventricle	heart
10	chr6:35438200-35442400	Genic enhancers	Fetal Muscle Leg	muscle
11	chr6:35438200-35442600	Genic enhancers	Fetal Muscle Trunk	muscle
12	chr6:35438200-35444200	Strong transcription	Thymus	Thymus
13	chr6:35438200-35458000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:35438400-35441200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:35438400-35441200	Genic enhancers	Duodenum Smooth Muscle	Duodenum
16	chr6:35438400-35441200	Genic enhancers	Pancreas	Pancrea
17	chr6:35438400-35441800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:35438400-35442400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr6:35438400-35442800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:35438400-35443600	Strong transcription	Esophagus	oesophagus
21	chr6:35438400-35449600	Strong transcription	Gastric	stomach
22	chr6:35438800-35441400	Strong transcription	HSMMtube	muscle
23	chr6:35438800-35441800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:35438800-35442200	Weak transcription	Small Intestine	intestine
25	chr6:35438800-35443400	Strong transcription	Primary T cells from cord blood	blood
26	chr6:35438800-35444200	Strong transcription	Brain Germinal Matrix	brain
27	chr6:35438800-35448200	Strong transcription	Right Ventricle	heart
28	chr6:35439000-35441400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:35439000-35441400	Genic enhancers	HepG2	liver
30	chr6:35439000-35441800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:35439000-35442800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:35439200-35441400	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr6:35439200-35441400	Strong transcription	Osteobl	bone
34	chr6:35439200-35442000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr6:35439200-35443400	Strong transcription	Fetal Thymus	thymus
36	chr6:35439200-35445000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:35439200-35447600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:35439200-35447600	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:35439200-35447800	Strong transcription	Colonic Mucosa	Colon
40	chr6:35439200-35448200	Strong transcription	Lung	lung
41	chr6:35439200-35452400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:35439200-35452600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:35439200-35453000	Weak transcription	Fetal Kidney	kidney
44	chr6:35439400-35452600	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr6:35439600-35443000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:35439800-35441400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:35439800-35441400	Strong transcription	HMEC	breast
48	chr6:35439800-35442800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:35439800-35443400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:35439800-35443800	Strong transcription	NH-A	brain

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