Variant report

Variant	rs11963040
Chromosome Location	chr6:35614687-35614688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35465083..35467815-chr6:35613967..35615894,2	MCF-7	breast:
2	chr6:35613520..35615470-chr6:35617649..35619369,2	K562	blood:
3	chr6:35606015..35609857-chr6:35612357..35615578,3	K562	blood:
4	chr6:35601393..35603122-chr6:35614137..35615978,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11961270	1.00[YRI][hapmap]
rs11964534	1.00[YRI][hapmap]
rs11966021	0.95[AFR][1000 genomes]
rs11967862	1.00[YRI][hapmap]
rs11969602	1.00[YRI][hapmap]
rs6457832	1.00[YRI][hapmap]
rs6917044	1.00[YRI][hapmap]
rs73417700	1.00[EUR][1000 genomes]
rs7740621	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7749799	1.00[YRI][hapmap]
rs7771718	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv1812273	chr6:35597703-35629285	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1848884	chr6:35607571-35629669	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv1811255	chr6:35614026-35628841	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv1801712	chr6:35614026-35646435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35588200-35630800	Weak transcription	Colonic Mucosa	Colon
2	chr6:35594200-35614800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:35597000-35615400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:35605000-35621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:35608200-35614800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:35608200-35622400	Weak transcription	Fetal Heart	heart
7	chr6:35608800-35616000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:35609000-35622400	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:35609000-35622400	Weak transcription	Esophagus	oesophagus
10	chr6:35609400-35615000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:35609400-35615200	Weak transcription	Brain Angular Gyrus	brain
12	chr6:35609400-35615200	Weak transcription	Placenta	Placenta
13	chr6:35609400-35615400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:35609400-35615600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:35609400-35617400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:35609400-35622400	Weak transcription	Lung	lung
17	chr6:35609400-35622400	Weak transcription	Ovary	ovary
18	chr6:35609400-35630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:35609400-35630600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:35609400-35630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:35609400-35630800	Weak transcription	Gastric	stomach
22	chr6:35609600-35615400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:35609600-35630200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:35609600-35630600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:35609800-35617400	Weak transcription	Aorta	Aorta
26	chr6:35610000-35630800	Weak transcription	Spleen	Spleen
27	chr6:35610000-35630800	Weak transcription	HMEC	breast
28	chr6:35610200-35616600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:35610400-35616200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:35610400-35630600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:35610600-35615000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:35610600-35615200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:35610600-35625000	Weak transcription	Right Ventricle	heart
34	chr6:35610600-35630000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:35610600-35630000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:35610600-35630000	Weak transcription	Pancreas	Pancrea
37	chr6:35610600-35630400	Weak transcription	HUVEC	blood vessel
38	chr6:35610600-35630800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:35610600-35631200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:35611200-35616800	Weak transcription	Adipose Nuclei	Adipose
41	chr6:35611200-35631000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:35611400-35630800	Weak transcription	Brain Substantia Nigra	brain
43	chr6:35611600-35615200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr6:35611600-35615200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr6:35611600-35615200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:35611600-35615800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:35611600-35630800	Weak transcription	Brain Anterior Caudate	brain
48	chr6:35611600-35631400	Weak transcription	Primary B cells from cord blood	blood
49	chr6:35611800-35615200	Weak transcription	Left Ventricle	heart
50	chr6:35611800-35615200	Weak transcription	Psoas Muscle	Psoas

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