Variant report

Variant	rs11964534
Chromosome Location	chr6:35611528-35611529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35610364..35613285-chr6:35617762..35619344,2	K562	blood:
2	chr6:35605088..35607255-chr6:35609543..35611672,2	K562	blood:
3	chr6:35611460..35613494-chr6:35654885..35657714,3	K562	blood:
4	chr6:35610446..35613724-chr6:35650796..35653465,3	K562	blood:
5	chr6:35609379..35614533-chr6:35694421..35697817,5	K562	blood:

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961270	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11963040	1.00[YRI][hapmap]
rs11963207	0.86[AFR][1000 genomes]
rs11966021	0.83[AFR][1000 genomes]
rs11967862	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11969602	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6457832	1.00[YRI][hapmap]
rs6917044	1.00[YRI][hapmap]
rs7749607	1.00[ASW][hapmap];0.83[MKK][hapmap]
rs7749799	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7754640	1.00[YRI][hapmap]
rs7771718	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv1812273	chr6:35597703-35629285	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
8	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	esv1848884	chr6:35607571-35629669	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35571200-35611800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:35575000-35611600	Strong transcription	Liver	Liver
3	chr6:35577600-35613200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:35586800-35613800	Weak transcription	Fetal Stomach	stomach
5	chr6:35588200-35630800	Weak transcription	Colonic Mucosa	Colon
6	chr6:35592800-35612000	Weak transcription	HepG2	liver
7	chr6:35594200-35614800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:35594600-35614600	Strong transcription	Fetal Thymus	thymus
9	chr6:35597000-35615400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:35597400-35613000	Strong transcription	K562	blood
11	chr6:35597600-35611800	Strong transcription	Left Ventricle	heart
12	chr6:35597800-35614200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr6:35601400-35612000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:35602000-35613600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:35602600-35612000	Weak transcription	Stomach Mucosa	stomach
16	chr6:35602800-35612000	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr6:35605000-35621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:35605400-35614400	Strong transcription	HSMM	muscle
19	chr6:35606000-35614000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:35606200-35611600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:35606400-35614600	Strong transcription	Primary T cells from cord blood	blood
22	chr6:35607400-35613000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr6:35608200-35613200	Weak transcription	Hela-S3	cervix
24	chr6:35608200-35614200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:35608200-35614800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:35608200-35622400	Weak transcription	Fetal Heart	heart
27	chr6:35608600-35611600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:35608800-35616000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:35609000-35612400	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:35609000-35622400	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:35609000-35622400	Weak transcription	Esophagus	oesophagus
32	chr6:35609400-35611600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:35609400-35612600	Weak transcription	HSMMtube	muscle
34	chr6:35609400-35612600	Weak transcription	NHEK	skin
35	chr6:35609400-35613000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:35609400-35613000	Weak transcription	Small Intestine	intestine
37	chr6:35609400-35614000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:35609400-35615000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:35609400-35615200	Weak transcription	Brain Angular Gyrus	brain
40	chr6:35609400-35615200	Weak transcription	Placenta	Placenta
41	chr6:35609400-35615400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:35609400-35615600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr6:35609400-35617400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:35609400-35622400	Weak transcription	Lung	lung
45	chr6:35609400-35622400	Weak transcription	Ovary	ovary
46	chr6:35609400-35630400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:35609400-35630600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:35609400-35630800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:35609400-35630800	Weak transcription	Gastric	stomach
50	chr6:35609600-35611600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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