Variant report
| Variant | rs11963201 |
|---|---|
| Chromosome Location | chr6:81107444-81107445 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11963125 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11965317 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1436872 | 1.00[EUR][1000 genomes] |
| rs1946751 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2083000 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2083001 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34539123 | 0.98[ASN][1000 genomes] |
| rs55653142 | 0.98[ASN][1000 genomes] |
| rs56096482 | 1.00[ASN][1000 genomes] |
| rs56740911 | 1.00[ASN][1000 genomes] |
| rs59202214 | 1.00[EUR][1000 genomes] |
| rs59641625 | 1.00[ASN][1000 genomes] |
| rs59802221 | 1.00[EUR][1000 genomes] |
| rs6912433 | 1.00[EUR][1000 genomes] |
| rs6919256 | 1.00[EUR][1000 genomes] |
| rs6930112 | 1.00[EUR][1000 genomes] |
| rs6936808 | 1.00[EUR][1000 genomes] |
| rs73469494 | 1.00[ASN][1000 genomes] |
| rs73471404 | 1.00[EUR][1000 genomes] |
| rs73751619 | 1.00[ASN][1000 genomes] |
| rs73751623 | 1.00[ASN][1000 genomes] |
| rs73751631 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73751632 | 1.00[ASN][1000 genomes] |
| rs7741133 | 1.00[EUR][1000 genomes] |
| rs7761657 | 1.00[EUR][1000 genomes] |
| rs9443756 | 1.00[EUR][1000 genomes] |
| rs9448956 | 1.00[EUR][1000 genomes] |
| rs9448959 | 1.00[EUR][1000 genomes] |
| rs961032 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034096 | chr6:80856135-81150170 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv932996 | chr6:80880896-81134991 | Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv497995 | chr6:80883701-81134991 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv531333 | chr6:81042427-81836484 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 5 | nsv1019670 | chr6:81086504-81569984 | ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:81107400-81107600 | ZNF genes & repeats | Aorta | Aorta |
